Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SCUBE3Q8IX30 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCUBE3Q8IX30 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCUBE3Q8IX30 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SCUBE3Q8IX30 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
SCUBE3Q8IX30 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.68■□□□□ 0.26
SCUBE3Q8IX30 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SCUBE3Q8IX30 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AC015922.1-201ENST00000421102 1152 ntBASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 INGX-202ENST00000489074 768 ntBASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 AC022144.1-201ENST00000602255 1580 ntBASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 Z97205.2-201ENST00000564697 1639 ntBASIC16.67■□□□□ 0.26
SCUBE3Q8IX30 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 MRPS18AP1-201ENST00000414458 589 ntBASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 SDHAP3-202ENST00000515467 728 ntBASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 ZNF890P-202ENST00000530367 1156 ntBASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SCUBE3Q8IX30 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SCUBE3Q8IX30 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms