Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.33■□□□□ 0.53
SHROOM1Q2M3G4 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 AP000812.2-201ENST00000538934 718 ntBASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 AP001063.1-201ENST00000568332 529 ntBASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 MIR4525-201ENST00000580000 75 ntBASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 AC024909.3-201ENST00000611513 2257 ntBASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.33■□□□□ 0.52
SHROOM1Q2M3G4 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 ACTBP11-201ENST00000436287 1126 ntBASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 AL355864.2-201ENST00000447420 863 ntBASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 AC009542.2-202ENST00000619004 1067 ntBASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHROOM1Q2M3G4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms