Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GPR39-203ENST00000622084 900 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
PRKDCP78527 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
PRKDCP78527 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
PRKDCP78527 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
PRKDCP78527 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC11.1□□□□□ -0.63
PRKDCP78527 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
PRKDCP78527 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
PRKDCP78527 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC11.1□□□□□ -0.63
PRKDCP78527 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC11.1□□□□□ -0.63
PRKDCP78527 TPM1-223ENST00000560445 485 ntTSL 3 BASIC11.1□□□□□ -0.63
PRKDCP78527 AC008805.1-201ENST00000590892 364 ntBASIC11.1□□□□□ -0.63
PRKDCP78527 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
PRKDCP78527 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC11.1□□□□□ -0.63
PRKDCP78527 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 RBM38-204ENST00000371219 760 ntTSL 2 BASIC11.1□□□□□ -0.63
PRKDCP78527 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC11.1□□□□□ -0.63
PRKDCP78527 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
PRKDCP78527 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
PRKDCP78527 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
PRKDCP78527 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC11.1□□□□□ -0.63
PRKDCP78527 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC11.1□□□□□ -0.63
PRKDCP78527 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 AC010141.1-201ENST00000411585 623 ntBASIC11.1□□□□□ -0.63
PRKDCP78527 AL627422.1-201ENST00000434104 580 ntBASIC11.1□□□□□ -0.63
PRKDCP78527 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
PRKDCP78527 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
PRKDCP78527 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 AC087289.5-201ENST00000586076 3175 ntBASIC11.1□□□□□ -0.63
PRKDCP78527 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
PRKDCP78527 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC11.09□□□□□ -0.63
PRKDCP78527 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC11.09□□□□□ -0.63
PRKDCP78527 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC11.09□□□□□ -0.63
PRKDCP78527 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC11.09□□□□□ -0.63
PRKDCP78527 AC023141.7-201ENST00000430646 407 ntBASIC11.09□□□□□ -0.63
PRKDCP78527 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC11.09□□□□□ -0.63
PRKDCP78527 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC11.09□□□□□ -0.63
PRKDCP78527 RN7SL163P-201ENST00000583100 276 ntBASIC11.09□□□□□ -0.63
PRKDCP78527 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 LRRFIP1P1-201ENST00000498774 2246 ntBASIC11.09□□□□□ -0.63
PRKDCP78527 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC11.09□□□□□ -0.63
PRKDCP78527 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
PRKDCP78527 NHP2-202ENST00000314397 599 ntTSL 2 BASIC11.09□□□□□ -0.63
PRKDCP78527 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC11.09□□□□□ -0.63
PRKDCP78527 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC11.09□□□□□ -0.63
PRKDCP78527 MBP-238ENST00000580402 915 ntTSL 5 BASIC11.09□□□□□ -0.63
PRKDCP78527 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC11.09□□□□□ -0.63
PRKDCP78527 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
PRKDCP78527 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms