Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 PTCHD3P3-201ENST00000403073 906 ntBASIC13.27□□□□□ -0.29
HOXA1P49639 COPS8-203ENST00000409334 794 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXA1P49639 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC13.27□□□□□ -0.29
HOXA1P49639 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
HOXA1P49639 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXA1P49639 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXA1P49639 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXA1P49639 MTDHP4-201ENST00000600287 670 ntBASIC13.27□□□□□ -0.29
HOXA1P49639 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 AC004706.3-202ENST00000621574 984 ntBASIC13.27□□□□□ -0.29
HOXA1P49639 REXO1L3P-201ENST00000622202 1288 ntBASIC13.27□□□□□ -0.29
HOXA1P49639 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
HOXA1P49639 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXA1P49639 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.29
HOXA1P49639 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXA1P49639 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXA1P49639 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXA1P49639 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HOXA1P49639 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXA1P49639 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
HOXA1P49639 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 AC087386.2-201ENST00000623212 4637 ntBASIC13.26□□□□□ -0.29
HOXA1P49639 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.26□□□□□ -0.29
HOXA1P49639 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
HOXA1P49639 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXA1P49639 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.26□□□□□ -0.29
HOXA1P49639 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC13.26□□□□□ -0.29
HOXA1P49639 PMS2P1-201ENST00000431037 1228 ntBASIC13.26□□□□□ -0.29
HOXA1P49639 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXA1P49639 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 SCARNA2-201ENST00000458748 420 ntBASIC13.26□□□□□ -0.29
HOXA1P49639 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXA1P49639 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXA1P49639 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HOXA1P49639 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXA1P49639 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXA1P49639 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
HOXA1P49639 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC13.26□□□□□ -0.29
HOXA1P49639 AP005117.1-202ENST00000581724 1908 ntBASIC13.26□□□□□ -0.29
HOXA1P49639 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 AC020765.3-201ENST00000613051 740 ntBASIC13.26□□□□□ -0.29
HOXA1P49639 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HOXA1P49639 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXA1P49639 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HOXA1P49639 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXA1P49639 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HOXA1P49639 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.25□□□□□ -0.29
HOXA1P49639 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms