Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.26■□□□□ 0.51
SCN4AP35499 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
SCN4AP35499 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.26■□□□□ 0.51
SCN4AP35499 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 RBM38-204ENST00000371219 760 ntTSL 2 BASIC18.26■□□□□ 0.51
SCN4AP35499 RN7SKP175-201ENST00000408472 289 ntBASIC18.26■□□□□ 0.51
SCN4AP35499 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.26■□□□□ 0.51
SCN4AP35499 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
SCN4AP35499 AL132994.2-201ENST00000603120 687 ntBASIC18.26■□□□□ 0.51
SCN4AP35499 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.26■□□□□ 0.51
SCN4AP35499 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.26■□□□□ 0.51
SCN4AP35499 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SCN4AP35499 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SCN4AP35499 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.26■□□□□ 0.51
SCN4AP35499 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SCN4AP35499 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SCN4AP35499 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SCN4AP35499 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
SCN4AP35499 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SCN4AP35499 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC18.26■□□□□ 0.51
SCN4AP35499 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SCN4AP35499 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.26■□□□□ 0.51
SCN4AP35499 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18.26■□□□□ 0.51
SCN4AP35499 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.26■□□□□ 0.51
SCN4AP35499 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.25■□□□□ 0.51
SCN4AP35499 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.25■□□□□ 0.51
SCN4AP35499 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 AC074138.1-201ENST00000611182 1303 ntBASIC18.25■□□□□ 0.51
SCN4AP35499 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.25■□□□□ 0.51
SCN4AP35499 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SCN4AP35499 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.25■□□□□ 0.51
SCN4AP35499 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 HNRNPA1P41-201ENST00000397777 928 ntBASIC18.25■□□□□ 0.51
SCN4AP35499 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.25■□□□□ 0.51
SCN4AP35499 AC009084.3-201ENST00000623356 437 ntBASIC18.25■□□□□ 0.51
SCN4AP35499 NAP1L6-202ENST00000641404 1222 ntBASIC18.25■□□□□ 0.51
SCN4AP35499 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SCN4AP35499 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SCN4AP35499 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.24■□□□□ 0.51
SCN4AP35499 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.24■□□□□ 0.51
SCN4AP35499 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 PIN4P1-201ENST00000451079 396 ntBASIC18.24■□□□□ 0.51
SCN4AP35499 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 AP002803.1-201ENST00000528836 498 ntBASIC18.24■□□□□ 0.51
SCN4AP35499 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.24■□□□□ 0.51
SCN4AP35499 AL162426.1-201ENST00000624141 743 ntBASIC18.24■□□□□ 0.51
SCN4AP35499 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.24■□□□□ 0.51
SCN4AP35499 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SCN4AP35499 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SCN4AP35499 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SCN4AP35499 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC18.23■□□□□ 0.51
SCN4AP35499 NAGK-204ENST00000443872 878 ntTSL 3 BASIC18.23■□□□□ 0.51
SCN4AP35499 AC104073.2-201ENST00000453737 312 ntBASIC18.23■□□□□ 0.51
SCN4AP35499 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC18.23■□□□□ 0.51
SCN4AP35499 MIR4649-201ENST00000582839 64 ntBASIC18.23■□□□□ 0.51
SCN4AP35499 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC18.23■□□□□ 0.51
SCN4AP35499 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms