Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.75■□□□□ 0.43
CIITAP33076 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
CIITAP33076 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.75■□□□□ 0.43
CIITAP33076 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CIITAP33076 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CIITAP33076 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.75■□□□□ 0.43
CIITAP33076 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.75■□□□□ 0.43
CIITAP33076 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.75■□□□□ 0.43
CIITAP33076 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.75■□□□□ 0.43
CIITAP33076 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CIITAP33076 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CIITAP33076 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
CIITAP33076 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.75■□□□□ 0.43
CIITAP33076 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.75■□□□□ 0.43
CIITAP33076 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.75■□□□□ 0.43
CIITAP33076 FAM86LP-201ENST00000478302 853 ntBASIC17.75■□□□□ 0.43
CIITAP33076 ELK1P1-201ENST00000485699 580 ntBASIC17.75■□□□□ 0.43
CIITAP33076 AP005018.1-201ENST00000525475 301 ntBASIC17.75■□□□□ 0.43
CIITAP33076 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.75■□□□□ 0.43
CIITAP33076 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CIITAP33076 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.75■□□□□ 0.43
CIITAP33076 AC027307.3-201ENST00000594262 1100 ntBASIC17.75■□□□□ 0.43
CIITAP33076 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.75■□□□□ 0.43
CIITAP33076 AC007431.3-201ENST00000623221 587 ntBASIC17.75■□□□□ 0.43
CIITAP33076 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CIITAP33076 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CIITAP33076 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
CIITAP33076 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CIITAP33076 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CIITAP33076 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CIITAP33076 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CIITAP33076 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.75■□□□□ 0.43
CIITAP33076 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CIITAP33076 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CIITAP33076 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CIITAP33076 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.74■□□□□ 0.43
CIITAP33076 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.74■□□□□ 0.43
CIITAP33076 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CIITAP33076 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.74■□□□□ 0.43
CIITAP33076 DGCR5-201ENST00000399539 862 ntBASIC17.74■□□□□ 0.43
CIITAP33076 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.74■□□□□ 0.43
CIITAP33076 MYCLP2-201ENST00000449268 967 ntBASIC17.74■□□□□ 0.43
CIITAP33076 BRI3BPP1-201ENST00000594224 787 ntBASIC17.74■□□□□ 0.43
CIITAP33076 AC008494.3-201ENST00000606615 944 ntBASIC17.74■□□□□ 0.43
CIITAP33076 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.74■□□□□ 0.43
CIITAP33076 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.74■□□□□ 0.43
CIITAP33076 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.74■□□□□ 0.43
CIITAP33076 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.74■□□□□ 0.43
CIITAP33076 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.74■□□□□ 0.43
CIITAP33076 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
CIITAP33076 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CIITAP33076 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CIITAP33076 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CIITAP33076 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.73■□□□□ 0.43
CIITAP33076 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.73■□□□□ 0.43
CIITAP33076 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.73■□□□□ 0.43
CIITAP33076 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CIITAP33076 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CIITAP33076 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CIITAP33076 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.73■□□□□ 0.43
CIITAP33076 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.73■□□□□ 0.43
CIITAP33076 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.73■□□□□ 0.43
CIITAP33076 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.73■□□□□ 0.43
CIITAP33076 AC092552.1-201ENST00000547243 906 ntBASIC17.73■□□□□ 0.43
CIITAP33076 WASH4P-201ENST00000564273 1246 ntBASIC17.73■□□□□ 0.43
CIITAP33076 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.73■□□□□ 0.43
CIITAP33076 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CIITAP33076 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms