Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC007431.3-201ENST00000623221 587 ntBASIC18.06■□□□□ 0.48
SMARCA1P28370 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.06■□□□□ 0.48
SMARCA1P28370 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.06■□□□□ 0.48
SMARCA1P28370 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
SMARCA1P28370 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.06■□□□□ 0.48
SMARCA1P28370 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.06■□□□□ 0.48
SMARCA1P28370 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SMARCA1P28370 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
SMARCA1P28370 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
SMARCA1P28370 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
SMARCA1P28370 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 CICP13-201ENST00000422015 2789 ntBASIC18.05■□□□□ 0.48
SMARCA1P28370 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
SMARCA1P28370 AC092127.1-201ENST00000567093 3455 ntBASIC18.05■□□□□ 0.48
SMARCA1P28370 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.05■□□□□ 0.48
SMARCA1P28370 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 AC098614.1-201ENST00000368528 745 ntBASIC18.05■□□□□ 0.48
SMARCA1P28370 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.05■□□□□ 0.48
SMARCA1P28370 DGCR5-201ENST00000399539 862 ntBASIC18.05■□□□□ 0.48
SMARCA1P28370 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.05■□□□□ 0.48
SMARCA1P28370 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.05■□□□□ 0.48
SMARCA1P28370 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.05■□□□□ 0.48
SMARCA1P28370 AC026410.3-201ENST00000514280 936 ntBASIC18.05■□□□□ 0.48
SMARCA1P28370 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.05■□□□□ 0.48
SMARCA1P28370 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.05■□□□□ 0.48
SMARCA1P28370 AC008494.3-201ENST00000606615 944 ntBASIC18.05■□□□□ 0.48
SMARCA1P28370 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.05■□□□□ 0.48
SMARCA1P28370 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.05■□□□□ 0.48
SMARCA1P28370 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.05■□□□□ 0.48
SMARCA1P28370 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SMARCA1P28370 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SMARCA1P28370 AC090616.6-203ENST00000579186 1945 ntBASIC18.05■□□□□ 0.48
SMARCA1P28370 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SMARCA1P28370 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.05■□□□□ 0.48
SMARCA1P28370 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.05■□□□□ 0.48
SMARCA1P28370 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.04■□□□□ 0.48
SMARCA1P28370 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.04■□□□□ 0.48
SMARCA1P28370 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SMARCA1P28370 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.04■□□□□ 0.48
SMARCA1P28370 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.04■□□□□ 0.48
SMARCA1P28370 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SMARCA1P28370 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.04■□□□□ 0.48
SMARCA1P28370 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.04■□□□□ 0.48
SMARCA1P28370 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.04■□□□□ 0.48
SMARCA1P28370 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.04■□□□□ 0.48
SMARCA1P28370 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.04■□□□□ 0.48
SMARCA1P28370 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SMARCA1P28370 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 AC008894.3-201ENST00000624324 3103 ntBASIC18.04■□□□□ 0.48
SMARCA1P28370 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SMARCA1P28370 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SMARCA1P28370 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.04■□□□□ 0.48
SMARCA1P28370 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.03■□□□□ 0.48
SMARCA1P28370 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SMARCA1P28370 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.03■□□□□ 0.48
SMARCA1P28370 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.03■□□□□ 0.48
SMARCA1P28370 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.03■□□□□ 0.48
SMARCA1P28370 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.03■□□□□ 0.48
SMARCA1P28370 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMARCA1P28370 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms