Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TPM1P09493 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TPM1P09493 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
TPM1P09493 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 AC109635.5-201ENST00000533593 962 ntBASIC17.55■□□□□ 0.4
TPM1P09493 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TPM1P09493 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.55■□□□□ 0.4
TPM1P09493 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
TPM1P09493 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TPM1P09493 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.55■□□□□ 0.4
TPM1P09493 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TPM1P09493 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TPM1P09493 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.55■□□□□ 0.4
TPM1P09493 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.55■□□□□ 0.4
TPM1P09493 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.54■□□□□ 0.4
TPM1P09493 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
TPM1P09493 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
TPM1P09493 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
TPM1P09493 PMS2P7-201ENST00000506558 1336 ntBASIC17.54■□□□□ 0.4
TPM1P09493 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TPM1P09493 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.54■□□□□ 0.4
TPM1P09493 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.54■□□□□ 0.4
TPM1P09493 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TPM1P09493 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 AF186996.4-201ENST00000467186 377 ntBASIC17.54■□□□□ 0.4
TPM1P09493 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.54■□□□□ 0.4
TPM1P09493 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.54■□□□□ 0.4
TPM1P09493 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TPM1P09493 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.54■□□□□ 0.4
TPM1P09493 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.54■□□□□ 0.4
TPM1P09493 AL078644.1-201ENST00000609881 752 ntBASIC17.54■□□□□ 0.4
TPM1P09493 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TPM1P09493 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.54■□□□□ 0.4
TPM1P09493 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TPM1P09493 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 AC092127.1-201ENST00000567093 3455 ntBASIC17.53■□□□□ 0.4
TPM1P09493 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.53■□□□□ 0.4
TPM1P09493 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.53■□□□□ 0.4
TPM1P09493 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC17.53■□□□□ 0.4
TPM1P09493 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 AL589702.1-201ENST00000641229 1509 ntBASIC17.53■□□□□ 0.4
TPM1P09493 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
TPM1P09493 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
TPM1P09493 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.53■□□□□ 0.4
TPM1P09493 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
TPM1P09493 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.53■□□□□ 0.4
TPM1P09493 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms