Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
HOXD4P09016 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXD4P09016 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HOXD4P09016 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXD4P09016 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXD4P09016 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
HOXD4P09016 AC140912.1-201ENST00000577171 1054 ntBASIC14.44□□□□□ -0.1
HOXD4P09016 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXD4P09016 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXD4P09016 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXD4P09016 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXD4P09016 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXD4P09016 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXD4P09016 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
HOXD4P09016 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXD4P09016 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HOXD4P09016 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXD4P09016 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXD4P09016 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXD4P09016 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD4P09016 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD4P09016 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD4P09016 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 GGT3P-204ENST00000453783 1664 ntBASIC14.43□□□□□ -0.1
HOXD4P09016 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXD4P09016 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD4P09016 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXD4P09016 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
HOXD4P09016 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 HLA-V-201ENST00000429037 534 ntBASIC14.43□□□□□ -0.1
HOXD4P09016 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXD4P09016 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.43□□□□□ -0.1
HOXD4P09016 ATP5G2P4-201ENST00000442175 420 ntBASIC14.43□□□□□ -0.1
HOXD4P09016 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXD4P09016 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.43□□□□□ -0.1
HOXD4P09016 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD4P09016 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD4P09016 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 AL132655.2-201ENST00000596276 594 ntBASIC14.43□□□□□ -0.1
HOXD4P09016 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.43□□□□□ -0.1
HOXD4P09016 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.43□□□□□ -0.1
HOXD4P09016 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXD4P09016 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD4P09016 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXD4P09016 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXD4P09016 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
HOXD4P09016 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD4P09016 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXD4P09016 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HOXD4P09016 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 AC060834.1-201ENST00000443027 2032 ntBASIC14.42□□□□□ -0.1
HOXD4P09016 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.42□□□□□ -0.1
HOXD4P09016 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
HOXD4P09016 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.42□□□□□ -0.1
HOXD4P09016 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.42□□□□□ -0.1
HOXD4P09016 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HOXD4P09016 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.42□□□□□ -0.1
HOXD4P09016 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.42□□□□□ -0.1
HOXD4P09016 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXD4P09016 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXD4P09016 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXD4P09016 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.42□□□□□ -0.1
HOXD4P09016 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms