Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 AC011840.2-201ENST00000563063 1520 ntBASIC9.62□□□□□ -0.87
APOBP04114 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
APOBP04114 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC9.62□□□□□ -0.87
APOBP04114 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC9.62□□□□□ -0.87
APOBP04114 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC9.61□□□□□ -0.87
APOBP04114 NAGK-204ENST00000443872 878 ntTSL 3 BASIC9.61□□□□□ -0.87
APOBP04114 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC9.61□□□□□ -0.87
APOBP04114 AC009779.1-201ENST00000551138 283 ntBASIC9.61□□□□□ -0.87
APOBP04114 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC9.61□□□□□ -0.87
APOBP04114 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC9.61□□□□□ -0.87
APOBP04114 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
APOBP04114 FZD10-202ENST00000539839 3282 ntBASIC9.61□□□□□ -0.87
APOBP04114 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
APOBP04114 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
APOBP04114 AL157813.1-201ENST00000612996 587 ntBASIC9.61□□□□□ -0.87
APOBP04114 AL023803.2-201ENST00000620080 638 ntBASIC9.61□□□□□ -0.87
APOBP04114 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
APOBP04114 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC9.61□□□□□ -0.87
APOBP04114 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC9.61□□□□□ -0.87
APOBP04114 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC9.61□□□□□ -0.87
APOBP04114 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 AL157792.1-201ENST00000488281 530 ntBASIC9.61□□□□□ -0.87
APOBP04114 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 MIR5196-201ENST00000578146 115 ntBASIC9.61□□□□□ -0.87
APOBP04114 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC9.61□□□□□ -0.87
APOBP04114 AC012044.1-201ENST00000603431 297 ntBASIC9.61□□□□□ -0.87
APOBP04114 AC132938.4-201ENST00000623835 848 ntBASIC9.61□□□□□ -0.87
APOBP04114 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
APOBP04114 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC9.61□□□□□ -0.87
APOBP04114 MESTP3-201ENST00000503460 968 ntBASIC9.61□□□□□ -0.87
APOBP04114 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC9.61□□□□□ -0.87
APOBP04114 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 AC074138.1-201ENST00000611182 1303 ntBASIC9.61□□□□□ -0.87
APOBP04114 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
APOBP04114 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
APOBP04114 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC9.6□□□□□ -0.87
APOBP04114 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC9.6□□□□□ -0.87
APOBP04114 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
APOBP04114 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
APOBP04114 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
APOBP04114 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC9.6□□□□□ -0.87
APOBP04114 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
APOBP04114 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
APOBP04114 ACTBP8-201ENST00000403258 1108 ntBASIC9.6□□□□□ -0.87
APOBP04114 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC9.6□□□□□ -0.87
APOBP04114 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC9.6□□□□□ -0.87
APOBP04114 DNAJB1P1-201ENST00000429417 1024 ntBASIC9.6□□□□□ -0.87
APOBP04114 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC9.6□□□□□ -0.87
APOBP04114 RN7SL596P-201ENST00000582123 288 ntBASIC9.6□□□□□ -0.87
APOBP04114 AC092171.5-201ENST00000608012 942 ntBASIC9.6□□□□□ -0.87
APOBP04114 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC9.6□□□□□ -0.87
APOBP04114 AC025262.2-201ENST00000623975 1056 ntBASIC9.6□□□□□ -0.87
APOBP04114 AC005618.3-201ENST00000624928 458 ntBASIC9.6□□□□□ -0.87
APOBP04114 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC9.6□□□□□ -0.87
APOBP04114 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
APOBP04114 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
APOBP04114 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
APOBP04114 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms