Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDKL5O76039 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDKL5O76039 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CDKL5O76039 AL080243.2-201ENST00000418783 582 ntBASIC18.43■□□□□ 0.54
CDKL5O76039 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.43■□□□□ 0.54
CDKL5O76039 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.43■□□□□ 0.54
CDKL5O76039 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.43■□□□□ 0.54
CDKL5O76039 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.43■□□□□ 0.54
CDKL5O76039 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.43■□□□□ 0.54
CDKL5O76039 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.43■□□□□ 0.54
CDKL5O76039 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.43■□□□□ 0.54
CDKL5O76039 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDKL5O76039 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CDKL5O76039 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDKL5O76039 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDKL5O76039 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDKL5O76039 TUBB3P1-201ENST00000405796 1332 ntBASIC18.43■□□□□ 0.54
CDKL5O76039 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDKL5O76039 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDKL5O76039 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDKL5O76039 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
CDKL5O76039 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CDKL5O76039 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.43■□□□□ 0.54
CDKL5O76039 AC090616.6-203ENST00000579186 1945 ntBASIC18.43■□□□□ 0.54
CDKL5O76039 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDKL5O76039 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 FO538757.1-201ENST00000623083 1397 ntBASIC18.42■□□□□ 0.54
CDKL5O76039 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 AC127383.1-201ENST00000444697 1800 ntBASIC18.42■□□□□ 0.54
CDKL5O76039 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.42■□□□□ 0.54
CDKL5O76039 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.42■□□□□ 0.54
CDKL5O76039 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.42■□□□□ 0.54
CDKL5O76039 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.42■□□□□ 0.54
CDKL5O76039 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.42■□□□□ 0.54
CDKL5O76039 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.42■□□□□ 0.54
CDKL5O76039 AC125807.1-201ENST00000483097 614 ntBASIC18.42■□□□□ 0.54
CDKL5O76039 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 AC067863.1-201ENST00000494933 530 ntBASIC18.42■□□□□ 0.54
CDKL5O76039 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.42■□□□□ 0.54
CDKL5O76039 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.42■□□□□ 0.54
CDKL5O76039 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.42■□□□□ 0.54
CDKL5O76039 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.42■□□□□ 0.54
CDKL5O76039 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.42■□□□□ 0.54
CDKL5O76039 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.42■□□□□ 0.54
CDKL5O76039 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.42■□□□□ 0.54
CDKL5O76039 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CDKL5O76039 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CDKL5O76039 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.42■□□□□ 0.54
CDKL5O76039 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.42■□□□□ 0.54
CDKL5O76039 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CDKL5O76039 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CDKL5O76039 AL607033.1-201ENST00000623900 1599 ntBASIC18.42■□□□□ 0.54
CDKL5O76039 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
CDKL5O76039 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.42■□□□□ 0.54
CDKL5O76039 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.41■□□□□ 0.54
CDKL5O76039 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CDKL5O76039 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CDKL5O76039 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.41■□□□□ 0.54
CDKL5O76039 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CDKL5O76039 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CDKL5O76039 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.41■□□□□ 0.54
CDKL5O76039 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.41■□□□□ 0.54
CDKL5O76039 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.41■□□□□ 0.54
CDKL5O76039 KLF2P3-201ENST00000451977 1087 ntBASIC18.41■□□□□ 0.54
CDKL5O76039 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.41■□□□□ 0.54
CDKL5O76039 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.41■□□□□ 0.54
CDKL5O76039 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.41■□□□□ 0.54
CDKL5O76039 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
CDKL5O76039 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CDKL5O76039 AC136621.1-201ENST00000624017 2304 ntBASIC18.41■□□□□ 0.54
CDKL5O76039 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 AL513477.1-201ENST00000602865 2407 ntBASIC18.41■□□□□ 0.54
CDKL5O76039 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CDKL5O76039 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms