Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
TRIM38O00635 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
TRIM38O00635 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
TRIM38O00635 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM38O00635 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM38O00635 AP005117.1-202ENST00000581724 1908 ntBASIC16.02■□□□□ 0.16
TRIM38O00635 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
TRIM38O00635 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.02■□□□□ 0.16
TRIM38O00635 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
TRIM38O00635 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
TRIM38O00635 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM38O00635 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM38O00635 RNA5SP410-201ENST00000516285 106 ntBASIC16.02■□□□□ 0.16
TRIM38O00635 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM38O00635 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.02■□□□□ 0.16
TRIM38O00635 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
TRIM38O00635 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM38O00635 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM38O00635 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.02■□□□□ 0.16
TRIM38O00635 AL133215.2-201ENST00000609242 977 ntBASIC16.02■□□□□ 0.16
TRIM38O00635 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM38O00635 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM38O00635 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
TRIM38O00635 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM38O00635 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.02■□□□□ 0.15
TRIM38O00635 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM38O00635 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.02■□□□□ 0.15
TRIM38O00635 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
TRIM38O00635 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.02■□□□□ 0.15
TRIM38O00635 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM38O00635 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.01■□□□□ 0.15
TRIM38O00635 AC073347.1-201ENST00000421633 2643 ntBASIC16.01■□□□□ 0.15
TRIM38O00635 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM38O00635 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
TRIM38O00635 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM38O00635 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
TRIM38O00635 OR8S1-201ENST00000310194 1080 ntBASIC16.01■□□□□ 0.15
TRIM38O00635 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.01■□□□□ 0.15
TRIM38O00635 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM38O00635 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM38O00635 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.01■□□□□ 0.15
TRIM38O00635 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM38O00635 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.01■□□□□ 0.15
TRIM38O00635 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.01■□□□□ 0.15
TRIM38O00635 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.01■□□□□ 0.15
TRIM38O00635 AL008721.1-201ENST00000609964 604 ntBASIC16.01■□□□□ 0.15
TRIM38O00635 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.01■□□□□ 0.15
TRIM38O00635 AC004840.1-201ENST00000636359 365 ntBASIC16.01■□□□□ 0.15
TRIM38O00635 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
TRIM38O00635 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.01■□□□□ 0.15
TRIM38O00635 KRT8P39-201ENST00000396270 1433 ntBASIC16.01■□□□□ 0.15
TRIM38O00635 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
TRIM38O00635 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.01■□□□□ 0.15
TRIM38O00635 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16■□□□□ 0.15
TRIM38O00635 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16■□□□□ 0.15
TRIM38O00635 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM38O00635 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16■□□□□ 0.15
TRIM38O00635 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16■□□□□ 0.15
TRIM38O00635 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM38O00635 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM38O00635 AC007541.1-201ENST00000570282 1469 ntBASIC16■□□□□ 0.15
TRIM38O00635 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM38O00635 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM38O00635 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRIM38O00635 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16■□□□□ 0.15
TRIM38O00635 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16■□□□□ 0.15
TRIM38O00635 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRIM38O00635 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16■□□□□ 0.15
TRIM38O00635 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16■□□□□ 0.15
TRIM38O00635 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16■□□□□ 0.15
TRIM38O00635 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms