Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 EEF1DP4-201ENST00000446006 880 ntBASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 AC097493.3-201ENST00000509725 367 ntBASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 AC022188.1-201ENST00000620960 1664 ntBASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.4■□□□□ 0.06
CUEDC1Q9NWM3 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
CUEDC1Q9NWM3 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.06
CUEDC1Q9NWM3 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.06
CUEDC1Q9NWM3 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 KRT8P12-202ENST00000472924 1397 ntBASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 AZGP1P1-201ENST00000411909 902 ntBASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 HLA-V-204ENST00000476601 1289 ntBASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 AC027369.6-201ENST00000525520 931 ntBASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 LINC02560-201ENST00000596379 459 ntBASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 TEX28P1-201ENST00000613479 1221 ntBASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 TEX28P2-201ENST00000617764 1221 ntBASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CUEDC1Q9NWM3 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
CUEDC1Q9NWM3 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CUEDC1Q9NWM3 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CUEDC1Q9NWM3 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CUEDC1Q9NWM3 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CUEDC1Q9NWM3 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CUEDC1Q9NWM3 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.38■□□□□ 0.05
CUEDC1Q9NWM3 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms