Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 KRT18P13-201ENST00000400056 1290 ntBASIC16.97■□□□□ 0.31
SIX2Q9NPC8 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 KRT18P64-201ENST00000434946 1219 ntBASIC16.97■□□□□ 0.31
SIX2Q9NPC8 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 SNHG9-202ENST00000564014 471 ntBASIC16.97■□□□□ 0.31
SIX2Q9NPC8 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 TCAF2P1-201ENST00000291129 2421 ntBASIC16.97■□□□□ 0.31
SIX2Q9NPC8 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
SIX2Q9NPC8 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 CROCCP1-201ENST00000426910 5675 ntBASIC16.96■□□□□ 0.31
SIX2Q9NPC8 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 AC025048.3-201ENST00000590609 569 ntBASIC16.96■□□□□ 0.31
SIX2Q9NPC8 AC005702.4-201ENST00000618393 416 ntBASIC16.96■□□□□ 0.31
SIX2Q9NPC8 SPDYE12P-201ENST00000618416 771 ntBASIC16.96■□□□□ 0.31
SIX2Q9NPC8 Z92544.3-201ENST00000624747 417 ntBASIC16.96■□□□□ 0.31
SIX2Q9NPC8 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 CETN4P-206ENST00000642099 2168 ntBASIC16.96■□□□□ 0.31
SIX2Q9NPC8 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SIX2Q9NPC8 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SIX2Q9NPC8 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SIX2Q9NPC8 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SIX2Q9NPC8 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.96■□□□□ 0.3
SIX2Q9NPC8 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
SIX2Q9NPC8 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SIX2Q9NPC8 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SIX2Q9NPC8 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SIX2Q9NPC8 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 AC023024.2-201ENST00000623561 1993 ntBASIC16.95■□□□□ 0.3
SIX2Q9NPC8 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms