Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC061975.2-201ENST00000581722 295 ntBASIC11.95□□□□□ -0.5
LINC00477Q96M19 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 ILF3-AS1-201ENST00000591501 1983 ntBASIC11.95□□□□□ -0.5
LINC00477Q96M19 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AC067750.1-201ENST00000608826 6545 ntBASIC11.95□□□□□ -0.5
LINC00477Q96M19 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AL109954.1-202ENST00000564051 2148 ntBASIC11.95□□□□□ -0.5
LINC00477Q96M19 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 ZNF259P1-201ENST00000407656 1365 ntBASIC11.94□□□□□ -0.5
LINC00477Q96M19 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 AC090616.6-203ENST00000579186 1945 ntBASIC11.94□□□□□ -0.5
LINC00477Q96M19 GOLGA2P9-201ENST00000596977 1937 ntBASIC11.94□□□□□ -0.5
LINC00477Q96M19 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 NEK7-201ENST00000367383 586 ntTSL 2 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 PP14571-201ENST00000404327 934 ntTSL 2 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 RPL13AP23-201ENST00000480739 586 ntBASIC11.94□□□□□ -0.5
LINC00477Q96M19 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 RNA5SP416-201ENST00000516838 111 ntBASIC11.94□□□□□ -0.5
LINC00477Q96M19 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 AC008267.7-201ENST00000624570 1194 ntBASIC11.94□□□□□ -0.5
LINC00477Q96M19 CAND2-206ENST00000626378 333 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00477Q96M19 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC11.94□□□□□ -0.5
LINC00477Q96M19 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
LINC00477Q96M19 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 AC099063.4-201ENST00000641099 1602 ntBASIC11.93□□□□□ -0.5
LINC00477Q96M19 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC11.93□□□□□ -0.5
LINC00477Q96M19 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms