Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
USP47Q96K76 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
USP47Q96K76 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
USP47Q96K76 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
USP47Q96K76 MFF-204ENST00000353339 2186 ntTSL 5 BASIC22.03■■□□□ 1.12
USP47Q96K76 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
USP47Q96K76 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
USP47Q96K76 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
USP47Q96K76 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP47Q96K76 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC22.02■■□□□ 1.12
USP47Q96K76 AC007274.1-201ENST00000439805 662 ntBASIC22.02■■□□□ 1.12
USP47Q96K76 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC22.02■■□□□ 1.12
USP47Q96K76 RN7SL399P-201ENST00000471648 279 ntBASIC22.02■■□□□ 1.12
USP47Q96K76 ELK1P1-201ENST00000485699 580 ntBASIC22.02■■□□□ 1.12
USP47Q96K76 TP53TG3HP-202ENST00000569755 579 ntBASIC22.02■■□□□ 1.12
USP47Q96K76 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC22.02■■□□□ 1.12
USP47Q96K76 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
USP47Q96K76 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP47Q96K76 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC22.02■■□□□ 1.12
USP47Q96K76 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC22.02■■□□□ 1.12
USP47Q96K76 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
USP47Q96K76 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC22.02■■□□□ 1.12
USP47Q96K76 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC22.02■■□□□ 1.12
USP47Q96K76 RERG-209ENST00000546331 1383 ntTSL 2 BASIC22.02■■□□□ 1.12
USP47Q96K76 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC22.02■■□□□ 1.12
USP47Q96K76 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP47Q96K76 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC22.02■■□□□ 1.12
USP47Q96K76 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP47Q96K76 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC22.02■■□□□ 1.12
USP47Q96K76 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.11
USP47Q96K76 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
USP47Q96K76 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
USP47Q96K76 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC22.01■■□□□ 1.11
USP47Q96K76 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC22.01■■□□□ 1.11
USP47Q96K76 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC22.01■■□□□ 1.11
USP47Q96K76 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 FAM86LP-201ENST00000478302 853 ntBASIC22.01■■□□□ 1.11
USP47Q96K76 FADS2-205ENST00000517839 469 ntTSL 3 BASIC22.01■■□□□ 1.11
USP47Q96K76 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC22.01■■□□□ 1.11
USP47Q96K76 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC22.01■■□□□ 1.11
USP47Q96K76 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC22.01■■□□□ 1.11
USP47Q96K76 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC22.01■■□□□ 1.11
USP47Q96K76 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC22.01■■□□□ 1.11
USP47Q96K76 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
USP47Q96K76 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 AC084364.1-201ENST00000551967 1556 ntBASIC22.01■■□□□ 1.11
USP47Q96K76 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP47Q96K76 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC22.01■■□□□ 1.11
USP47Q96K76 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
USP47Q96K76 AC105917.1-201ENST00000506637 2539 ntBASIC22.01■■□□□ 1.11
USP47Q96K76 STK33-217ENST00000534493 1895 ntTSL 2 BASIC22.01■■□□□ 1.11
USP47Q96K76 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC22.01■■□□□ 1.11
USP47Q96K76 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP47Q96K76 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC22■■□□□ 1.11
USP47Q96K76 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC22■■□□□ 1.11
USP47Q96K76 COQ6-210ENST00000554920 649 ntTSL 3 BASIC22■■□□□ 1.11
USP47Q96K76 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC22■■□□□ 1.11
USP47Q96K76 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC22■■□□□ 1.11
USP47Q96K76 BRI3BPP1-201ENST00000594224 787 ntBASIC22■■□□□ 1.11
USP47Q96K76 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC22■■□□□ 1.11
USP47Q96K76 AC025048.6-201ENST00000634326 1161 ntBASIC22■■□□□ 1.11
USP47Q96K76 AL358472.5-202ENST00000641448 1267 ntBASIC22■■□□□ 1.11
USP47Q96K76 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP47Q96K76 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
USP47Q96K76 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
USP47Q96K76 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP47Q96K76 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC22■■□□□ 1.11
USP47Q96K76 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP47Q96K76 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
USP47Q96K76 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC22■■□□□ 1.11
USP47Q96K76 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC22■■□□□ 1.11
USP47Q96K76 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP47Q96K76 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
USP47Q96K76 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP47Q96K76 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
USP47Q96K76 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC22■■□□□ 1.11
USP47Q96K76 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP47Q96K76 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC21.99■■□□□ 1.11
USP47Q96K76 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
USP47Q96K76 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC21.99■■□□□ 1.11
USP47Q96K76 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC21.99■■□□□ 1.11
USP47Q96K76 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC21.99■■□□□ 1.11
USP47Q96K76 GALT-202ENST00000450095 1280 ntTSL 2 BASIC21.99■■□□□ 1.11
USP47Q96K76 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21.99■■□□□ 1.11
USP47Q96K76 GPX4-206ENST00000588919 803 ntTSL 2 BASIC21.99■■□□□ 1.11
USP47Q96K76 AC027307.3-201ENST00000594262 1100 ntBASIC21.99■■□□□ 1.11
USP47Q96K76 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
USP47Q96K76 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC21.99■■□□□ 1.11
USP47Q96K76 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms