Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHROOM3Q8TF72 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 RN7SL618P-201ENST00000477850 296 ntBASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 SPDYE22P-201ENST00000582158 798 ntBASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 AL132655.2-201ENST00000596276 594 ntBASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 MIR6069-201ENST00000620069 79 ntBASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHROOM3Q8TF72 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 COX5BP8-201ENST00000416911 349 ntBASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHROOM3Q8TF72 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 AC126177.1-201ENST00000547829 2218 ntBASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 AL133267.1-201ENST00000398220 340 ntBASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 IGHV3-42-201ENST00000520410 361 ntBASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 ZNF890P-202ENST00000530367 1156 ntBASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHROOM3Q8TF72 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms