Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.71□□□□□ -0.06
RNF4P78317 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.71□□□□□ -0.06
RNF4P78317 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
RNF4P78317 LINC02199-201ENST00000506655 2702 ntBASIC14.71□□□□□ -0.06
RNF4P78317 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RNF4P78317 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
RNF4P78317 AL136379.1-201ENST00000623471 2642 ntBASIC14.7□□□□□ -0.06
RNF4P78317 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.7□□□□□ -0.06
RNF4P78317 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.7□□□□□ -0.06
RNF4P78317 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.7□□□□□ -0.06
RNF4P78317 SPTLC1P1-201ENST00000447199 261 ntBASIC14.7□□□□□ -0.06
RNF4P78317 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 SPDYE18-201ENST00000510091 1050 ntBASIC14.7□□□□□ -0.06
RNF4P78317 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.7□□□□□ -0.06
RNF4P78317 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.7□□□□□ -0.06
RNF4P78317 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.7□□□□□ -0.06
RNF4P78317 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.7□□□□□ -0.06
RNF4P78317 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.7□□□□□ -0.06
RNF4P78317 AC138761.1-201ENST00000584393 385 ntBASIC14.7□□□□□ -0.06
RNF4P78317 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
RNF4P78317 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.7□□□□□ -0.06
RNF4P78317 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
RNF4P78317 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.7□□□□□ -0.06
RNF4P78317 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
RNF4P78317 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.7□□□□□ -0.06
RNF4P78317 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RNF4P78317 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
RNF4P78317 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
RNF4P78317 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.69□□□□□ -0.06
RNF4P78317 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 TCAF2P1-201ENST00000291129 2421 ntBASIC14.69□□□□□ -0.06
RNF4P78317 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
RNF4P78317 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.69□□□□□ -0.06
RNF4P78317 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.69□□□□□ -0.06
RNF4P78317 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 TIMM17BP1-201ENST00000545713 516 ntBASIC14.69□□□□□ -0.06
RNF4P78317 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.69□□□□□ -0.06
RNF4P78317 SRD5A3P1-201ENST00000603021 949 ntBASIC14.69□□□□□ -0.06
RNF4P78317 AC097359.3-201ENST00000603982 1210 ntBASIC14.69□□□□□ -0.06
RNF4P78317 AC004233.3-201ENST00000607794 1269 ntBASIC14.69□□□□□ -0.06
RNF4P78317 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.69□□□□□ -0.06
RNF4P78317 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.69□□□□□ -0.06
RNF4P78317 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.69□□□□□ -0.06
RNF4P78317 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RNF4P78317 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms