Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.27■□□□□ 0.52
CTCFP49711 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.27■□□□□ 0.52
CTCFP49711 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTCFP49711 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CTCFP49711 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTCFP49711 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTCFP49711 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTCFP49711 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CTCFP49711 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC18.27■□□□□ 0.52
CTCFP49711 CYP4F24P-201ENST00000586049 1580 ntBASIC18.27■□□□□ 0.52
CTCFP49711 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.27■□□□□ 0.52
CTCFP49711 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTCFP49711 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
CTCFP49711 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTCFP49711 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC18.27■□□□□ 0.52
CTCFP49711 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTCFP49711 HNRNPA1P63-201ENST00000427917 963 ntBASIC18.27■□□□□ 0.52
CTCFP49711 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
CTCFP49711 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CTCFP49711 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.27■□□□□ 0.52
CTCFP49711 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC18.27■□□□□ 0.52
CTCFP49711 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC18.27■□□□□ 0.52
CTCFP49711 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC18.27■□□□□ 0.52
CTCFP49711 WT1-AS_6.1-201ENST00000614919 121 ntBASIC18.27■□□□□ 0.52
CTCFP49711 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.27■□□□□ 0.52
CTCFP49711 AC006453.4-201ENST00000636949 1252 ntBASIC18.27■□□□□ 0.52
CTCFP49711 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.27■□□□□ 0.52
CTCFP49711 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTCFP49711 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTCFP49711 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CTCFP49711 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTCFP49711 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CTCFP49711 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CTCFP49711 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CTCFP49711 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.27■□□□□ 0.51
CTCFP49711 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CTCFP49711 AC025271.4-201ENST00000621477 1726 ntBASIC18.26■□□□□ 0.51
CTCFP49711 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CTCFP49711 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.26■□□□□ 0.51
CTCFP49711 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CTCFP49711 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.26■□□□□ 0.51
CTCFP49711 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.26■□□□□ 0.51
CTCFP49711 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC18.26■□□□□ 0.51
CTCFP49711 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CTCFP49711 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC18.26■□□□□ 0.51
CTCFP49711 FGFR3P1-201ENST00000449999 601 ntBASIC18.26■□□□□ 0.51
CTCFP49711 AL157792.1-201ENST00000488281 530 ntBASIC18.26■□□□□ 0.51
CTCFP49711 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.26■□□□□ 0.51
CTCFP49711 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC18.26■□□□□ 0.51
CTCFP49711 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 AP003392.6-201ENST00000607709 325 ntBASIC18.26■□□□□ 0.51
CTCFP49711 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC18.26■□□□□ 0.51
CTCFP49711 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.26■□□□□ 0.51
CTCFP49711 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CTCFP49711 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CTCFP49711 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CTCFP49711 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.26■□□□□ 0.51
CTCFP49711 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.25■□□□□ 0.51
CTCFP49711 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC18.25■□□□□ 0.51
CTCFP49711 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.25■□□□□ 0.51
CTCFP49711 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.25■□□□□ 0.51
CTCFP49711 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.25■□□□□ 0.51
CTCFP49711 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CTCFP49711 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 CRCP-204ENST00000398684 492 ntTSL 2 BASIC18.25■□□□□ 0.51
CTCFP49711 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.25■□□□□ 0.51
CTCFP49711 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC18.25■□□□□ 0.51
CTCFP49711 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 RNA5SP486-201ENST00000515961 83 ntBASIC18.25■□□□□ 0.51
CTCFP49711 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.25■□□□□ 0.51
CTCFP49711 CENPX-208ENST00000584347 799 ntTSL 2 BASIC18.25■□□□□ 0.51
CTCFP49711 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC18.25■□□□□ 0.51
CTCFP49711 AC025181.2-201ENST00000606994 802 ntBASIC18.25■□□□□ 0.51
CTCFP49711 AC100757.4-201ENST00000626934 759 ntBASIC18.25■□□□□ 0.51
CTCFP49711 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTCFP49711 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms