Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 RNU1-129P-201ENST00000384064 167 ntBASIC15.23■□□□□ 0.03
MSX2P35548 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.23■□□□□ 0.03
MSX2P35548 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 FGFR3P6-201ENST00000457012 610 ntBASIC15.23■□□□□ 0.03
MSX2P35548 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.23■□□□□ 0.03
MSX2P35548 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC15.23■□□□□ 0.03
MSX2P35548 U1.21-201ENST00000580816 167 ntBASIC15.23■□□□□ 0.03
MSX2P35548 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.23■□□□□ 0.03
MSX2P35548 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.23■□□□□ 0.03
MSX2P35548 AL355877.3-201ENST00000622820 899 ntBASIC15.23■□□□□ 0.03
MSX2P35548 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
MSX2P35548 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.23■□□□□ 0.03
MSX2P35548 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
MSX2P35548 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.23■□□□□ 0.03
MSX2P35548 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
MSX2P35548 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.23■□□□□ 0.03
MSX2P35548 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.22■□□□□ 0.03
MSX2P35548 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
MSX2P35548 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.22■□□□□ 0.03
MSX2P35548 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.22■□□□□ 0.03
MSX2P35548 AC025062.2-201ENST00000605477 670 ntBASIC15.22■□□□□ 0.03
MSX2P35548 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
MSX2P35548 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
MSX2P35548 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
MSX2P35548 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.22■□□□□ 0.03
MSX2P35548 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.22■□□□□ 0.03
MSX2P35548 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MSX2P35548 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.21■□□□□ 0.03
MSX2P35548 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
MSX2P35548 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
MSX2P35548 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
MSX2P35548 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.21■□□□□ 0.03
MSX2P35548 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.21■□□□□ 0.03
MSX2P35548 HMGA1P7-201ENST00000406908 502 ntBASIC15.21■□□□□ 0.03
MSX2P35548 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.21■□□□□ 0.03
MSX2P35548 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.21■□□□□ 0.03
MSX2P35548 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MSX2P35548 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms