Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.59■□□□□ 0.09
SHMT2P34897 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.59■□□□□ 0.09
SHMT2P34897 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.59■□□□□ 0.09
SHMT2P34897 AL136982.4-201ENST00000437689 1740 ntBASIC15.59■□□□□ 0.09
SHMT2P34897 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.59■□□□□ 0.09
SHMT2P34897 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
SHMT2P34897 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHMT2P34897 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SHMT2P34897 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SHMT2P34897 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SHMT2P34897 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SHMT2P34897 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
SHMT2P34897 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.58■□□□□ 0.09
SHMT2P34897 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SHMT2P34897 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
SHMT2P34897 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SHMT2P34897 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.58■□□□□ 0.09
SHMT2P34897 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
SHMT2P34897 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
SHMT2P34897 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
SHMT2P34897 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
SHMT2P34897 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
SHMT2P34897 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
SHMT2P34897 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SHMT2P34897 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
SHMT2P34897 RPL37AP1-201ENST00000412502 279 ntBASIC15.58■□□□□ 0.08
SHMT2P34897 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.58■□□□□ 0.08
SHMT2P34897 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.58■□□□□ 0.08
SHMT2P34897 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.58■□□□□ 0.08
SHMT2P34897 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.58■□□□□ 0.08
SHMT2P34897 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.58■□□□□ 0.08
SHMT2P34897 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SHMT2P34897 TEX28P1-201ENST00000613479 1221 ntBASIC15.58■□□□□ 0.08
SHMT2P34897 TEX28P2-201ENST00000617764 1221 ntBASIC15.58■□□□□ 0.08
SHMT2P34897 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
SHMT2P34897 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
SHMT2P34897 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 KRT8P12-202ENST00000472924 1397 ntBASIC15.58■□□□□ 0.08
SHMT2P34897 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 AC100757.3-201ENST00000622361 1406 ntBASIC15.58■□□□□ 0.08
SHMT2P34897 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SHMT2P34897 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.58■□□□□ 0.08
SHMT2P34897 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHMT2P34897 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.58■□□□□ 0.08
SHMT2P34897 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.57■□□□□ 0.08
SHMT2P34897 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SHMT2P34897 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SHMT2P34897 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
SHMT2P34897 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
SHMT2P34897 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SHMT2P34897 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
SHMT2P34897 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.57■□□□□ 0.08
SHMT2P34897 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
SHMT2P34897 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SHMT2P34897 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.57■□□□□ 0.08
SHMT2P34897 AP002414.2-201ENST00000591780 3365 ntBASIC15.57■□□□□ 0.08
SHMT2P34897 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
SHMT2P34897 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.57■□□□□ 0.08
SHMT2P34897 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.57■□□□□ 0.08
SHMT2P34897 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.57■□□□□ 0.08
SHMT2P34897 AL512638.1-201ENST00000457493 794 ntBASIC15.57■□□□□ 0.08
SHMT2P34897 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.57■□□□□ 0.08
SHMT2P34897 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.57■□□□□ 0.08
SHMT2P34897 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.57■□□□□ 0.08
SHMT2P34897 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.57■□□□□ 0.08
SHMT2P34897 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.57■□□□□ 0.08
SHMT2P34897 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.57■□□□□ 0.08
SHMT2P34897 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
SHMT2P34897 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHMT2P34897 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms