Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.78■□□□□ 0.44
CIITAP33076 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.78■□□□□ 0.44
CIITAP33076 AC098850.1-201ENST00000419919 790 ntBASIC17.78■□□□□ 0.44
CIITAP33076 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.78■□□□□ 0.44
CIITAP33076 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.78■□□□□ 0.44
CIITAP33076 MIR8072-201ENST00000614241 80 ntBASIC17.78■□□□□ 0.44
CIITAP33076 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.78■□□□□ 0.44
CIITAP33076 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.78■□□□□ 0.44
CIITAP33076 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CIITAP33076 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.78■□□□□ 0.44
CIITAP33076 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CIITAP33076 AC025048.6-201ENST00000634326 1161 ntBASIC17.78■□□□□ 0.44
CIITAP33076 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.78■□□□□ 0.44
CIITAP33076 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
CIITAP33076 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
CIITAP33076 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CIITAP33076 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.78■□□□□ 0.44
CIITAP33076 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CIITAP33076 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
CIITAP33076 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CIITAP33076 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CIITAP33076 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.77■□□□□ 0.44
CIITAP33076 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.77■□□□□ 0.44
CIITAP33076 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CIITAP33076 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.77■□□□□ 0.44
CIITAP33076 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.77■□□□□ 0.44
CIITAP33076 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CIITAP33076 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.77■□□□□ 0.44
CIITAP33076 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CIITAP33076 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CIITAP33076 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
CIITAP33076 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CIITAP33076 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.77■□□□□ 0.44
CIITAP33076 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CIITAP33076 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CIITAP33076 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CIITAP33076 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
CIITAP33076 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CIITAP33076 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.77■□□□□ 0.44
CIITAP33076 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CIITAP33076 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.77■□□□□ 0.44
CIITAP33076 AC036164.1-201ENST00000570544 333 ntBASIC17.77■□□□□ 0.44
CIITAP33076 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.77■□□□□ 0.44
CIITAP33076 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.77■□□□□ 0.44
CIITAP33076 TMEM261P1-201ENST00000604899 340 ntBASIC17.77■□□□□ 0.44
CIITAP33076 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.77■□□□□ 0.44
CIITAP33076 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.77■□□□□ 0.44
CIITAP33076 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.77■□□□□ 0.44
CIITAP33076 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CIITAP33076 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CIITAP33076 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CIITAP33076 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CIITAP33076 TP73-209ENST00000603362 1668 ntTSL 5 BASIC17.77■□□□□ 0.43
CIITAP33076 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
CIITAP33076 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CIITAP33076 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CIITAP33076 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
CIITAP33076 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CIITAP33076 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CIITAP33076 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.76■□□□□ 0.43
CIITAP33076 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.76■□□□□ 0.43
CIITAP33076 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.76■□□□□ 0.43
CIITAP33076 AC123567.1-201ENST00000548294 1261 ntBASIC17.76■□□□□ 0.43
CIITAP33076 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.76■□□□□ 0.43
CIITAP33076 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.76■□□□□ 0.43
CIITAP33076 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.76■□□□□ 0.43
CIITAP33076 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.76■□□□□ 0.43
CIITAP33076 AC105233.6-201ENST00000642093 218 ntBASIC17.76■□□□□ 0.43
CIITAP33076 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CIITAP33076 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 AC127383.1-201ENST00000444697 1800 ntBASIC17.76■□□□□ 0.43
CIITAP33076 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.76■□□□□ 0.43
CIITAP33076 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.76■□□□□ 0.43
CIITAP33076 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CIITAP33076 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
CIITAP33076 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CIITAP33076 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CIITAP33076 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CIITAP33076 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CIITAP33076 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.75■□□□□ 0.43
CIITAP33076 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CIITAP33076 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms