Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
SMARCA1P28370 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
SMARCA1P28370 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.09■□□□□ 0.49
SMARCA1P28370 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SMARCA1P28370 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SMARCA1P28370 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.09■□□□□ 0.49
SMARCA1P28370 AL139384.1-201ENST00000612143 3047 ntBASIC18.09■□□□□ 0.49
SMARCA1P28370 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.09■□□□□ 0.49
SMARCA1P28370 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SMARCA1P28370 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.08■□□□□ 0.49
SMARCA1P28370 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
SMARCA1P28370 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.08■□□□□ 0.49
SMARCA1P28370 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SMARCA1P28370 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.08■□□□□ 0.49
SMARCA1P28370 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SMARCA1P28370 AC098850.1-201ENST00000419919 790 ntBASIC18.08■□□□□ 0.48
SMARCA1P28370 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 MYCLP2-201ENST00000449268 967 ntBASIC18.08■□□□□ 0.48
SMARCA1P28370 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.08■□□□□ 0.48
SMARCA1P28370 GAPDHP40-201ENST00000505218 1006 ntBASIC18.08■□□□□ 0.48
SMARCA1P28370 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.08■□□□□ 0.48
SMARCA1P28370 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.08■□□□□ 0.48
SMARCA1P28370 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.08■□□□□ 0.48
SMARCA1P28370 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.08■□□□□ 0.48
SMARCA1P28370 AL358472.5-202ENST00000641448 1267 ntBASIC18.08■□□□□ 0.48
SMARCA1P28370 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.08■□□□□ 0.48
SMARCA1P28370 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.08■□□□□ 0.48
SMARCA1P28370 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SMARCA1P28370 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SMARCA1P28370 AC007950.2-201ENST00000615045 2347 ntBASIC18.07■□□□□ 0.48
SMARCA1P28370 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 AC020658.6-201ENST00000623564 1870 ntBASIC18.07■□□□□ 0.48
SMARCA1P28370 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SMARCA1P28370 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.07■□□□□ 0.48
SMARCA1P28370 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SMARCA1P28370 METTL26-204ENST00000397665 558 ntTSL 2 BASIC18.07■□□□□ 0.48
SMARCA1P28370 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 RPL13AP25-201ENST00000484130 612 ntBASIC18.07■□□□□ 0.48
SMARCA1P28370 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC18.07■□□□□ 0.48
SMARCA1P28370 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.07■□□□□ 0.48
SMARCA1P28370 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.07■□□□□ 0.48
SMARCA1P28370 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.07■□□□□ 0.48
SMARCA1P28370 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.07■□□□□ 0.48
SMARCA1P28370 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.07■□□□□ 0.48
SMARCA1P28370 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
SMARCA1P28370 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.07■□□□□ 0.48
SMARCA1P28370 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SMARCA1P28370 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SMARCA1P28370 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SMARCA1P28370 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.06■□□□□ 0.48
SMARCA1P28370 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
SMARCA1P28370 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.06■□□□□ 0.48
SMARCA1P28370 LINC02199-201ENST00000506655 2702 ntBASIC18.06■□□□□ 0.48
SMARCA1P28370 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 AC084364.1-201ENST00000551967 1556 ntBASIC18.06■□□□□ 0.48
SMARCA1P28370 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.06■□□□□ 0.48
SMARCA1P28370 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SMARCA1P28370 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.06■□□□□ 0.48
SMARCA1P28370 ELK1P1-201ENST00000485699 580 ntBASIC18.06■□□□□ 0.48
SMARCA1P28370 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.06■□□□□ 0.48
SMARCA1P28370 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.06■□□□□ 0.48
SMARCA1P28370 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.06■□□□□ 0.48
SMARCA1P28370 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms