Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
APOEP02649 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
APOEP02649 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
APOEP02649 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.68■□□□□ 0.26
APOEP02649 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 SPDYE17-201ENST00000412399 783 ntBASIC16.68■□□□□ 0.26
APOEP02649 RPL37AP1-201ENST00000412502 279 ntBASIC16.68■□□□□ 0.26
APOEP02649 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.68■□□□□ 0.26
APOEP02649 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.68■□□□□ 0.26
APOEP02649 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.68■□□□□ 0.26
APOEP02649 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.68■□□□□ 0.26
APOEP02649 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.68■□□□□ 0.26
APOEP02649 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.68■□□□□ 0.26
APOEP02649 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
APOEP02649 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.68■□□□□ 0.26
APOEP02649 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.68■□□□□ 0.26
APOEP02649 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
APOEP02649 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.68■□□□□ 0.26
APOEP02649 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.67■□□□□ 0.26
APOEP02649 KRT8P12-202ENST00000472924 1397 ntBASIC16.67■□□□□ 0.26
APOEP02649 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.67■□□□□ 0.26
APOEP02649 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
APOEP02649 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.26
APOEP02649 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
APOEP02649 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
APOEP02649 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.67■□□□□ 0.26
APOEP02649 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.67■□□□□ 0.26
APOEP02649 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.67■□□□□ 0.26
APOEP02649 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.67■□□□□ 0.26
APOEP02649 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
APOEP02649 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.67■□□□□ 0.26
APOEP02649 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 CDC14C-201ENST00000428251 1719 ntBASIC16.67■□□□□ 0.26
APOEP02649 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.67■□□□□ 0.26
APOEP02649 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
APOEP02649 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
APOEP02649 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.67■□□□□ 0.26
APOEP02649 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.66■□□□□ 0.26
APOEP02649 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
APOEP02649 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.66■□□□□ 0.26
APOEP02649 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.66■□□□□ 0.26
APOEP02649 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 LINC02447-202ENST00000501888 2146 ntBASIC16.66■□□□□ 0.26
APOEP02649 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
APOEP02649 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.66■□□□□ 0.26
APOEP02649 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
APOEP02649 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.66■□□□□ 0.26
APOEP02649 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.66■□□□□ 0.26
APOEP02649 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.66■□□□□ 0.26
APOEP02649 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
APOEP02649 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.66■□□□□ 0.26
APOEP02649 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms