Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.22■□□□□ 0.51
COL2A1P02458 IGHV3OR16-16-201ENST00000563644 343 ntBASIC18.22■□□□□ 0.51
COL2A1P02458 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.22■□□□□ 0.51
COL2A1P02458 EEF1DP1-201ENST00000585891 896 ntBASIC18.22■□□□□ 0.51
COL2A1P02458 AC007787.1-201ENST00000588095 1583 ntBASIC18.22■□□□□ 0.51
COL2A1P02458 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC18.22■□□□□ 0.51
COL2A1P02458 ECM1P1-201ENST00000604092 1279 ntBASIC18.22■□□□□ 0.51
COL2A1P02458 ETV2-208ENST00000621247 941 ntTSL 5 BASIC18.22■□□□□ 0.51
COL2A1P02458 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL2A1P02458 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL2A1P02458 AC024909.3-201ENST00000611513 2257 ntBASIC18.22■□□□□ 0.51
COL2A1P02458 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
COL2A1P02458 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.22■□□□□ 0.51
COL2A1P02458 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL2A1P02458 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.22■□□□□ 0.51
COL2A1P02458 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.22■□□□□ 0.51
COL2A1P02458 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL2A1P02458 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.21■□□□□ 0.51
COL2A1P02458 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.21■□□□□ 0.51
COL2A1P02458 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC18.21■□□□□ 0.51
COL2A1P02458 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC18.21■□□□□ 0.51
COL2A1P02458 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC18.21■□□□□ 0.51
COL2A1P02458 HNRNPA1P48-202ENST00000565308 961 ntBASIC18.21■□□□□ 0.51
COL2A1P02458 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC18.21■□□□□ 0.51
COL2A1P02458 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
COL2A1P02458 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
COL2A1P02458 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL2A1P02458 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
COL2A1P02458 AC099398.1-201ENST00000567919 2776 ntBASIC18.21■□□□□ 0.51
COL2A1P02458 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL2A1P02458 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.21■□□□□ 0.5
COL2A1P02458 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 EIF3FP3-201ENST00000434851 1086 ntBASIC18.2■□□□□ 0.5
COL2A1P02458 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC18.2■□□□□ 0.5
COL2A1P02458 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 SAMD11P1-201ENST00000571429 661 ntBASIC18.2■□□□□ 0.5
COL2A1P02458 KLK3-211ENST00000597483 810 ntTSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC18.2■□□□□ 0.5
COL2A1P02458 AC244093.1-201ENST00000610837 814 ntBASIC18.2■□□□□ 0.5
COL2A1P02458 AC005695.3-201ENST00000614522 232 ntBASIC18.2■□□□□ 0.5
COL2A1P02458 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.2■□□□□ 0.5
COL2A1P02458 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.2■□□□□ 0.5
COL2A1P02458 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC18.2■□□□□ 0.5
COL2A1P02458 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL2A1P02458 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
COL2A1P02458 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
COL2A1P02458 AL158070.2-201ENST00000623713 1621 ntBASIC18.2■□□□□ 0.5
COL2A1P02458 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.2■□□□□ 0.5
COL2A1P02458 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.2■□□□□ 0.5
COL2A1P02458 MIR1202-201ENST00000408529 83 ntBASIC18.2■□□□□ 0.5
COL2A1P02458 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC18.2■□□□□ 0.5
COL2A1P02458 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC18.2■□□□□ 0.5
COL2A1P02458 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
COL2A1P02458 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.2■□□□□ 0.5
COL2A1P02458 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.2■□□□□ 0.5
COL2A1P02458 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL2A1P02458 AC243960.2-201ENST00000600996 747 ntBASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms