Protein–RNA interactions for Protein: A7MD48

SRRM4, Serine/arginine repetitive matrix protein 4, humanhuman

Known RBP Predictions only

Length 611 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4A7MD48 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
SRRM4A7MD48 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRRM4A7MD48 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRRM4A7MD48 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRRM4A7MD48 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRRM4A7MD48 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SRRM4A7MD48 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRRM4A7MD48 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRRM4A7MD48 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
SRRM4A7MD48 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SRRM4A7MD48 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SRRM4A7MD48 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.82□□□□□ -0.36
SRRM4A7MD48 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SRRM4A7MD48 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 KRT8P37-201ENST00000451609 1420 ntBASIC12.81□□□□□ -0.36
SRRM4A7MD48 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 STOM-202ENST00000347359 870 ntTSL 2 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 AC004461.1-201ENST00000412461 403 ntBASIC12.81□□□□□ -0.36
SRRM4A7MD48 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 DNAJB3-201ENST00000446806 729 ntBASIC12.81□□□□□ -0.36
SRRM4A7MD48 AC112482.1-201ENST00000492080 688 ntBASIC12.81□□□□□ -0.36
SRRM4A7MD48 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 AC093520.2-201ENST00000561830 333 ntBASIC12.81□□□□□ -0.36
SRRM4A7MD48 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 AL450472.2-201ENST00000603663 1156 ntBASIC12.81□□□□□ -0.36
SRRM4A7MD48 AC055717.3-201ENST00000622967 595 ntBASIC12.81□□□□□ -0.36
SRRM4A7MD48 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SRRM4A7MD48 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.81□□□□□ -0.36
SRRM4A7MD48 AC138035.3-201ENST00000622706 2791 ntBASIC12.81□□□□□ -0.36
SRRM4A7MD48 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 AL109954.1-202ENST00000564051 2148 ntBASIC12.8□□□□□ -0.36
SRRM4A7MD48 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 AC006486.2-201ENST00000624246 2199 ntBASIC12.8□□□□□ -0.36
SRRM4A7MD48 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 RAC2-202ENST00000401529 569 ntTSL 4 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SRRM4A7MD48 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 COX10-202ENST00000429152 875 ntTSL 2 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 EEF1DP4-201ENST00000446006 880 ntBASIC12.8□□□□□ -0.36
SRRM4A7MD48 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 PHKG1P2-201ENST00000457537 863 ntBASIC12.8□□□□□ -0.36
SRRM4A7MD48 ALG1L8P-201ENST00000533887 760 ntBASIC12.8□□□□□ -0.36
SRRM4A7MD48 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC12.8□□□□□ -0.36
SRRM4A7MD48 AC026979.3-201ENST00000607315 403 ntBASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms