Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 AL592309.1-201ENST00000443127 649 ntBASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 KRT8P23-201ENST00000560090 1207 ntBASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 AL671883.3-201ENST00000603274 991 ntBASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 FER1L4-210ENST00000615531 5998 ntBASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.18
TCRBV7S3A2A0A539 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 AL136379.1-201ENST00000623471 2642 ntBASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 AZGP1P1-201ENST00000411909 902 ntBASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 AC004832.2-201ENST00000426397 482 ntBASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 HTR5BP-201ENST00000430851 1154 ntBASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 LINC00528-201ENST00000600723 2160 ntBASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 AGAP7P-201ENST00000582299 2062 ntBASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 AGAP14-201ENST00000624701 2060 ntBASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TCRBV7S3A2A0A539 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 AL607033.1-201ENST00000623900 1599 ntBASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
TCRBV7S3A2A0A539 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms