Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 AC007326.2-201ENST00000624224 7579 ntBASIC12.9□□□□□ -0.34
FOXA2Q9Y261 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
FOXA2Q9Y261 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.35
FOXA2Q9Y261 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
FOXA2Q9Y261 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
FOXA2Q9Y261 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AC105250.1-201ENST00000509378 2057 ntBASIC12.89□□□□□ -0.35
FOXA2Q9Y261 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 STOM-202ENST00000347359 870 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 CBR1-202ENST00000399191 838 ntTSL 3 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AC254562.1-201ENST00000417586 456 ntBASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AC005237.2-201ENST00000434368 219 ntBASIC12.89□□□□□ -0.35
FOXA2Q9Y261 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AP006288.1-201ENST00000446065 395 ntBASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 SNHG9-202ENST00000564014 471 ntBASIC12.89□□□□□ -0.35
FOXA2Q9Y261 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AL691403.2-201ENST00000618460 490 ntBASIC12.89□□□□□ -0.35
FOXA2Q9Y261 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA2Q9Y261 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 UXT-AS1-201ENST00000590504 1525 ntBASIC12.88□□□□□ -0.35
FOXA2Q9Y261 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
FOXA2Q9Y261 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms