Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 AC004461.1-201ENST00000412461 403 ntBASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 AL353705.2-201ENST00000428243 662 ntBASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 AL596257.1-201ENST00000641463 2694 ntBASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS29Q9UBQ0 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 DBET-201ENST00000630918 3363 ntBASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 AL627223.1-201ENST00000416693 442 ntBASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 FAM58DP-201ENST00000428076 619 ntBASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 AP000344.2-201ENST00000512987 629 ntBASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 AC018529.1-201ENST00000613063 361 ntBASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS29Q9UBQ0 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS29Q9UBQ0 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VPS29Q9UBQ0 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS29Q9UBQ0 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS29Q9UBQ0 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS29Q9UBQ0 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms