Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 SERBP1P3-201ENST00000459980 809 ntBASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 AC097493.3-201ENST00000509725 367 ntBASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 AL512361.1-201ENST00000554200 418 ntBASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 AL158211.3-201ENST00000607385 239 ntBASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 AC093512.1-201ENST00000617969 520 ntBASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SMC4Q9NTJ3 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 AC009090.5-201ENST00000624886 2285 ntBASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 CENPM-205ENST00000404067 905 ntTSL 3 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 PMS2P2-201ENST00000425039 1128 ntBASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC20.36■□□□□ 0.85
SMC4Q9NTJ3 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 PNMT-202ENST00000394246 821 ntTSL 2 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 IGHV3-42-201ENST00000520410 361 ntBASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 MIR6069-201ENST00000620069 79 ntBASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMC4Q9NTJ3 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms