Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 AL592424.1-201ENST00000563624 1536 ntBASIC16.45■□□□□ 0.22
HPS4Q9NQG7 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AC079328.2-201ENST00000561241 3354 ntBASIC16.45■□□□□ 0.22
HPS4Q9NQG7 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AC004987.2-201ENST00000395959 1148 ntBASIC16.45■□□□□ 0.22
HPS4Q9NQG7 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 RPS2P32-201ENST00000439199 892 ntBASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AC007389.4-201ENST00000454674 793 ntBASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AL033527.5-201ENST00000641382 801 ntBASIC16.45■□□□□ 0.22
HPS4Q9NQG7 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HPS4Q9NQG7 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 AC092171.3-201ENST00000610122 2651 ntBASIC16.44■□□□□ 0.22
HPS4Q9NQG7 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 AC092552.1-201ENST00000547243 906 ntBASIC16.44■□□□□ 0.22
HPS4Q9NQG7 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 MIR4259-201ENST00000584466 101 ntBASIC16.44■□□□□ 0.22
HPS4Q9NQG7 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 AC008735.3-201ENST00000596646 500 ntBASIC16.44■□□□□ 0.22
HPS4Q9NQG7 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.44■□□□□ 0.22
HPS4Q9NQG7 RPSAP52-203ENST00000622976 1023 ntBASIC16.44■□□□□ 0.22
HPS4Q9NQG7 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.44■□□□□ 0.22
HPS4Q9NQG7 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HPS4Q9NQG7 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms