Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 FAM8A2P-201ENST00000528813 1142 ntBASIC17.64■□□□□ 0.41
VTA1Q9NP79 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 GNRHR2-203ENST00000581100 1187 ntBASIC17.64■□□□□ 0.41
VTA1Q9NP79 RN7SL219P-201ENST00000582872 296 ntBASIC17.64■□□□□ 0.41
VTA1Q9NP79 AC244669.2-201ENST00000612320 853 ntBASIC17.64■□□□□ 0.41
VTA1Q9NP79 RHOXF1P1-202ENST00000635473 501 ntBASIC17.64■□□□□ 0.41
VTA1Q9NP79 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 C2orf27AP3-201ENST00000434123 579 ntBASIC17.63■□□□□ 0.41
VTA1Q9NP79 YBX1P6-201ENST00000442962 1002 ntBASIC17.63■□□□□ 0.41
VTA1Q9NP79 GAPDHP40-201ENST00000505218 1006 ntBASIC17.63■□□□□ 0.41
VTA1Q9NP79 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 AL354718.3-201ENST00000616414 581 ntBASIC17.63■□□□□ 0.41
VTA1Q9NP79 MIR6869-201ENST00000619434 62 ntBASIC17.63■□□□□ 0.41
VTA1Q9NP79 CR382287.1-201ENST00000623954 586 ntBASIC17.63■□□□□ 0.41
VTA1Q9NP79 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.63■□□□□ 0.41
VTA1Q9NP79 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VTA1Q9NP79 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 AD000864.1-201ENST00000624076 2295 ntBASIC17.62■□□□□ 0.41
VTA1Q9NP79 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 BRWD1P1-201ENST00000401091 371 ntBASIC17.62■□□□□ 0.41
VTA1Q9NP79 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 AP001582.1-201ENST00000525856 295 ntBASIC17.62■□□□□ 0.41
VTA1Q9NP79 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 MIR4313-201ENST00000580760 101 ntBASIC17.62■□□□□ 0.41
VTA1Q9NP79 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VTA1Q9NP79 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VTA1Q9NP79 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms