Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ECHDC3Q96DC8 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.83■□□□□ 0.12
ECHDC3Q96DC8 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
ECHDC3Q96DC8 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ECHDC3Q96DC8 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
ECHDC3Q96DC8 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ECHDC3Q96DC8 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
ECHDC3Q96DC8 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
ECHDC3Q96DC8 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 AC087499.6-201ENST00000411576 835 ntBASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.82■□□□□ 0.12
ECHDC3Q96DC8 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 COX20P2-201ENST00000452636 358 ntBASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 TP53TG3HP-202ENST00000569755 579 ntBASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 CHCHD2P3-201ENST00000603038 451 ntBASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 AC000095.1-201ENST00000603208 874 ntBASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
ECHDC3Q96DC8 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
ECHDC3Q96DC8 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms