Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.6■□□□□ 0.41
HPS3Q969F9 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.6■□□□□ 0.41
HPS3Q969F9 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
HPS3Q969F9 AC004449.1-201ENST00000564240 433 ntBASIC17.6■□□□□ 0.41
HPS3Q969F9 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
HPS3Q969F9 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 AC104640.1-201ENST00000562617 2109 ntBASIC17.6■□□□□ 0.41
HPS3Q969F9 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
HPS3Q969F9 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.6■□□□□ 0.41
HPS3Q969F9 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.6■□□□□ 0.41
HPS3Q969F9 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.6■□□□□ 0.41
HPS3Q969F9 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
HPS3Q969F9 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HPS3Q969F9 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.59■□□□□ 0.41
HPS3Q969F9 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.59■□□□□ 0.41
HPS3Q969F9 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.59■□□□□ 0.41
HPS3Q969F9 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.59■□□□□ 0.41
HPS3Q969F9 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HPS3Q969F9 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HPS3Q969F9 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.59■□□□□ 0.41
HPS3Q969F9 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC17.59■□□□□ 0.41
HPS3Q969F9 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.59■□□□□ 0.41
HPS3Q969F9 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.59■□□□□ 0.41
HPS3Q969F9 AL080243.2-201ENST00000418783 582 ntBASIC17.59■□□□□ 0.41
HPS3Q969F9 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.59■□□□□ 0.41
HPS3Q969F9 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.59■□□□□ 0.41
HPS3Q969F9 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.59■□□□□ 0.41
HPS3Q969F9 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.59■□□□□ 0.41
HPS3Q969F9 AL589739.1-201ENST00000607720 493 ntBASIC17.59■□□□□ 0.41
HPS3Q969F9 SPDYE12P-201ENST00000618416 771 ntBASIC17.59■□□□□ 0.41
HPS3Q969F9 AC079781.4-201ENST00000641908 219 ntBASIC17.59■□□□□ 0.41
HPS3Q969F9 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC17.59■□□□□ 0.41
HPS3Q969F9 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
HPS3Q969F9 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.59■□□□□ 0.41
HPS3Q969F9 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HPS3Q969F9 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
HPS3Q969F9 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.58■□□□□ 0.41
HPS3Q969F9 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
HPS3Q969F9 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HPS3Q969F9 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HPS3Q969F9 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.58■□□□□ 0.41
HPS3Q969F9 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.58■□□□□ 0.41
HPS3Q969F9 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HPS3Q969F9 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
HPS3Q969F9 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HPS3Q969F9 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HPS3Q969F9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
HPS3Q969F9 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HPS3Q969F9 AL035456.1-201ENST00000456064 1369 ntBASIC17.58■□□□□ 0.4
HPS3Q969F9 KRT8P12-202ENST00000472924 1397 ntBASIC17.58■□□□□ 0.4
HPS3Q969F9 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HPS3Q969F9 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HPS3Q969F9 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HPS3Q969F9 TUBB3P1-201ENST00000405796 1332 ntBASIC17.58■□□□□ 0.4
HPS3Q969F9 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HPS3Q969F9 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.58■□□□□ 0.4
HPS3Q969F9 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HPS3Q969F9 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
HPS3Q969F9 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.58■□□□□ 0.4
HPS3Q969F9 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.58■□□□□ 0.4
HPS3Q969F9 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.58■□□□□ 0.4
HPS3Q969F9 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.58■□□□□ 0.4
HPS3Q969F9 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.58■□□□□ 0.4
HPS3Q969F9 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.58■□□□□ 0.4
HPS3Q969F9 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
HPS3Q969F9 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.58■□□□□ 0.4
HPS3Q969F9 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HPS3Q969F9 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.58■□□□□ 0.4
HPS3Q969F9 AC127383.1-201ENST00000444697 1800 ntBASIC17.58■□□□□ 0.4
HPS3Q969F9 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HPS3Q969F9 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HPS3Q969F9 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.58■□□□□ 0.4
HPS3Q969F9 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HPS3Q969F9 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
HPS3Q969F9 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms