Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BRF1Q92994 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.71■□□□□ 0.59
BRF1Q92994 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BRF1Q92994 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BRF1Q92994 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BRF1Q92994 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
BRF1Q92994 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BRF1Q92994 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BRF1Q92994 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.7■□□□□ 0.58
BRF1Q92994 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.7■□□□□ 0.58
BRF1Q92994 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.7■□□□□ 0.58
BRF1Q92994 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
BRF1Q92994 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.7■□□□□ 0.58
BRF1Q92994 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
BRF1Q92994 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
BRF1Q92994 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
BRF1Q92994 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.7■□□□□ 0.58
BRF1Q92994 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.7■□□□□ 0.58
BRF1Q92994 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.7■□□□□ 0.58
BRF1Q92994 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.7■□□□□ 0.58
BRF1Q92994 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.7■□□□□ 0.58
BRF1Q92994 AC139530.3-201ENST00000620344 690 ntBASIC18.7■□□□□ 0.58
BRF1Q92994 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
BRF1Q92994 AC022532.1-201ENST00000624563 1728 ntBASIC18.7■□□□□ 0.58
BRF1Q92994 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
BRF1Q92994 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.7■□□□□ 0.58
BRF1Q92994 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BRF1Q92994 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.7■□□□□ 0.58
BRF1Q92994 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.69■□□□□ 0.58
BRF1Q92994 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.69■□□□□ 0.58
BRF1Q92994 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.69■□□□□ 0.58
BRF1Q92994 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
BRF1Q92994 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.69■□□□□ 0.58
BRF1Q92994 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.69■□□□□ 0.58
BRF1Q92994 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.69■□□□□ 0.58
BRF1Q92994 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.69■□□□□ 0.58
BRF1Q92994 AL079307.3-201ENST00000556114 283 ntBASIC18.69■□□□□ 0.58
BRF1Q92994 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.69■□□□□ 0.58
BRF1Q92994 OVCH1-AS1-204ENST00000641955 5529 ntBASIC18.69■□□□□ 0.58
BRF1Q92994 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.69■□□□□ 0.58
BRF1Q92994 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
BRF1Q92994 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.69■□□□□ 0.58
BRF1Q92994 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
BRF1Q92994 AC103702.1-201ENST00000548801 2630 ntBASIC18.69■□□□□ 0.58
BRF1Q92994 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF1Q92994 KRT8P12-202ENST00000472924 1397 ntBASIC18.68■□□□□ 0.58
BRF1Q92994 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRF1Q92994 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.68■□□□□ 0.58
BRF1Q92994 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF1Q92994 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF1Q92994 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF1Q92994 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF1Q92994 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRF1Q92994 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.68■□□□□ 0.58
BRF1Q92994 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.68■□□□□ 0.58
BRF1Q92994 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms