Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 MIR770-201ENST00000390219 98 ntBASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 BASP1P1-201ENST00000430708 665 ntBASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 AC241585.1-201ENST00000433527 519 ntBASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 RNA5SP421-201ENST00000516864 134 ntBASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 AL080243.2-201ENST00000418783 582 ntBASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 TEX28P1-201ENST00000613479 1221 ntBASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 TEX28P2-201ENST00000617764 1221 ntBASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 MIR6069-201ENST00000620069 79 ntBASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 AL590560.3-201ENST00000623350 461 ntBASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 AC100757.3-201ENST00000622361 1406 ntBASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.73□□□□□ -0.05
NUP54Q7Z3B4 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 AC011477.6-201ENST00000604980 1927 ntBASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 AC087499.5-201ENST00000452760 1342 ntBASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
NUP54Q7Z3B4 EEF1DP4-201ENST00000446006 880 ntBASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms