Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 KRT18P3-201ENST00000451602 1288 ntBASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 AC145285.3-201ENST00000564603 959 ntBASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 AC064836.3-201ENST00000607928 673 ntBASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PPP4R4Q6NUP7 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 AL359258.3-201ENST00000622910 2331 ntBASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.33■□□□□ 0.05
PPP4R4Q6NUP7 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 IGHV3-65-201ENST00000523210 341 ntBASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 AC092865.5-201ENST00000545435 363 ntBASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 CICP23-201ENST00000605013 2741 ntBASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 AC087481.3-201ENST00000602886 1894 ntBASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.33■□□□□ 0.04
PPP4R4Q6NUP7 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.32■□□□□ 0.04
PPP4R4Q6NUP7 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms