Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
KRT39Q6A163 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.15■□□□□ 0.34
KRT39Q6A163 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.15■□□□□ 0.34
KRT39Q6A163 AL158211.3-201ENST00000607385 239 ntBASIC17.15■□□□□ 0.34
KRT39Q6A163 AL033527.5-202ENST00000641632 1098 ntBASIC17.15■□□□□ 0.34
KRT39Q6A163 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 AC020658.6-201ENST00000623564 1870 ntBASIC17.15■□□□□ 0.34
KRT39Q6A163 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
KRT39Q6A163 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.15■□□□□ 0.34
KRT39Q6A163 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.15■□□□□ 0.34
KRT39Q6A163 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
KRT39Q6A163 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
KRT39Q6A163 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
KRT39Q6A163 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.15■□□□□ 0.34
KRT39Q6A163 AL607033.1-201ENST00000623900 1599 ntBASIC17.15■□□□□ 0.34
KRT39Q6A163 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
KRT39Q6A163 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
KRT39Q6A163 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.14■□□□□ 0.33
KRT39Q6A163 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
KRT39Q6A163 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.14■□□□□ 0.33
KRT39Q6A163 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
KRT39Q6A163 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
KRT39Q6A163 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.14■□□□□ 0.33
KRT39Q6A163 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT39Q6A163 AC027369.6-201ENST00000525520 931 ntBASIC17.14■□□□□ 0.33
KRT39Q6A163 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.14■□□□□ 0.33
KRT39Q6A163 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.14■□□□□ 0.33
KRT39Q6A163 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
KRT39Q6A163 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.14■□□□□ 0.33
KRT39Q6A163 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.14■□□□□ 0.33
KRT39Q6A163 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
KRT39Q6A163 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT39Q6A163 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT39Q6A163 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 AC105250.1-201ENST00000509378 2057 ntBASIC17.14■□□□□ 0.33
KRT39Q6A163 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.14■□□□□ 0.33
KRT39Q6A163 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
KRT39Q6A163 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.14■□□□□ 0.33
KRT39Q6A163 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT39Q6A163 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
KRT39Q6A163 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.13■□□□□ 0.33
KRT39Q6A163 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
KRT39Q6A163 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.13■□□□□ 0.33
KRT39Q6A163 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
KRT39Q6A163 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.13■□□□□ 0.33
KRT39Q6A163 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
KRT39Q6A163 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.13■□□□□ 0.33
KRT39Q6A163 AC092580.3-201ENST00000430932 139 ntBASIC17.13■□□□□ 0.33
KRT39Q6A163 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.13■□□□□ 0.33
KRT39Q6A163 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
KRT39Q6A163 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
KRT39Q6A163 AC097493.3-201ENST00000509725 367 ntBASIC17.13■□□□□ 0.33
KRT39Q6A163 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.13■□□□□ 0.33
KRT39Q6A163 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.13■□□□□ 0.33
KRT39Q6A163 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.13■□□□□ 0.33
KRT39Q6A163 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.13■□□□□ 0.33
KRT39Q6A163 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 AL139384.1-201ENST00000612143 3047 ntBASIC17.13■□□□□ 0.33
KRT39Q6A163 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
KRT39Q6A163 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT39Q6A163 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.12■□□□□ 0.33
KRT39Q6A163 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.12■□□□□ 0.33
KRT39Q6A163 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT39Q6A163 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms