Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 FXNP2-201ENST00000411625 547 ntBASIC15.32■□□□□ 0.04
COL28A1Q2UY09 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 CYP2A7P1-201ENST00000595391 815 ntBASIC15.32■□□□□ 0.04
COL28A1Q2UY09 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.32■□□□□ 0.04
COL28A1Q2UY09 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.31■□□□□ 0.04
COL28A1Q2UY09 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 AL365330.1-201ENST00000607459 531 ntBASIC15.31■□□□□ 0.04
COL28A1Q2UY09 U62317.3-201ENST00000608319 855 ntBASIC15.31■□□□□ 0.04
COL28A1Q2UY09 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL28A1Q2UY09 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.3■□□□□ 0.04
COL28A1Q2UY09 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL28A1Q2UY09 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms