Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX4Q06945 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 AC112492.5-201ENST00000421897 457 ntBASIC16.86■□□□□ 0.29
SOX4Q06945 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.86■□□□□ 0.29
SOX4Q06945 AC007389.4-201ENST00000454674 793 ntBASIC16.86■□□□□ 0.29
SOX4Q06945 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX4Q06945 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
SOX4Q06945 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.86■□□□□ 0.29
SOX4Q06945 AC133539.2-201ENST00000604757 467 ntBASIC16.86■□□□□ 0.29
SOX4Q06945 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.86■□□□□ 0.29
SOX4Q06945 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
SOX4Q06945 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.86■□□□□ 0.29
SOX4Q06945 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
SOX4Q06945 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
SOX4Q06945 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.85■□□□□ 0.29
SOX4Q06945 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.85■□□□□ 0.29
SOX4Q06945 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SOX4Q06945 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
SOX4Q06945 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.85■□□□□ 0.29
SOX4Q06945 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 AC134915.1-201ENST00000426461 574 ntBASIC16.85■□□□□ 0.29
SOX4Q06945 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SOX4Q06945 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
SOX4Q06945 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.85■□□□□ 0.29
SOX4Q06945 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.85■□□□□ 0.29
SOX4Q06945 AL162274.1-201ENST00000617191 1098 ntBASIC16.85■□□□□ 0.29
SOX4Q06945 CU634019.7-201ENST00000624153 1185 ntBASIC16.85■□□□□ 0.29
SOX4Q06945 FP236241.2-201ENST00000624906 1185 ntBASIC16.85■□□□□ 0.29
SOX4Q06945 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.85■□□□□ 0.29
SOX4Q06945 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SOX4Q06945 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.85■□□□□ 0.29
SOX4Q06945 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
SOX4Q06945 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 KRT8P22-201ENST00000562317 1415 ntBASIC16.85■□□□□ 0.29
SOX4Q06945 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
SOX4Q06945 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SOX4Q06945 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
SOX4Q06945 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.84■□□□□ 0.29
SOX4Q06945 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
SOX4Q06945 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.84■□□□□ 0.29
SOX4Q06945 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
SOX4Q06945 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX4Q06945 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
SOX4Q06945 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.84■□□□□ 0.29
SOX4Q06945 AC244107.1-201ENST00000442033 332 ntBASIC16.84■□□□□ 0.29
SOX4Q06945 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.84■□□□□ 0.29
SOX4Q06945 USP32P1-208ENST00000506594 1164 ntBASIC16.84■□□□□ 0.29
SOX4Q06945 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SOX4Q06945 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.84■□□□□ 0.29
SOX4Q06945 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.84■□□□□ 0.29
SOX4Q06945 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.84■□□□□ 0.29
SOX4Q06945 AC120045.2-201ENST00000567334 178 ntBASIC16.84■□□□□ 0.29
SOX4Q06945 AC015910.1-201ENST00000579400 975 ntBASIC16.84■□□□□ 0.29
SOX4Q06945 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.84■□□□□ 0.29
SOX4Q06945 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.84■□□□□ 0.29
SOX4Q06945 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.84■□□□□ 0.29
SOX4Q06945 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX4Q06945 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
SOX4Q06945 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX4Q06945 PCDHA1-201ENST00000378133 2726 ntBASIC16.84■□□□□ 0.29
SOX4Q06945 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX4Q06945 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SOX4Q06945 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.84■□□□□ 0.29
SOX4Q06945 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SOX4Q06945 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SOX4Q06945 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SOX4Q06945 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SOX4Q06945 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms