Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
SUMO3P55854 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SUMO3P55854 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.36□□□□□ -0.11
SUMO3P55854 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.36□□□□□ -0.11
SUMO3P55854 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.36□□□□□ -0.11
SUMO3P55854 AC114501.2-201ENST00000439631 535 ntBASIC14.36□□□□□ -0.11
SUMO3P55854 RPL13P2-201ENST00000440687 659 ntBASIC14.36□□□□□ -0.11
SUMO3P55854 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.36□□□□□ -0.11
SUMO3P55854 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 AL512638.1-201ENST00000457493 794 ntBASIC14.36□□□□□ -0.11
SUMO3P55854 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.36□□□□□ -0.11
SUMO3P55854 RNA5SP421-201ENST00000516864 134 ntBASIC14.36□□□□□ -0.11
SUMO3P55854 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.36□□□□□ -0.11
SUMO3P55854 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.36□□□□□ -0.11
SUMO3P55854 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SUMO3P55854 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
SUMO3P55854 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
SUMO3P55854 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SUMO3P55854 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.36□□□□□ -0.11
SUMO3P55854 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.36□□□□□ -0.11
SUMO3P55854 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.35□□□□□ -0.11
SUMO3P55854 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SUMO3P55854 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.35□□□□□ -0.11
SUMO3P55854 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SUMO3P55854 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
SUMO3P55854 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.35□□□□□ -0.11
SUMO3P55854 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.35□□□□□ -0.11
SUMO3P55854 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.35□□□□□ -0.11
SUMO3P55854 AC015922.1-201ENST00000421102 1152 ntBASIC14.35□□□□□ -0.11
SUMO3P55854 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.35□□□□□ -0.11
SUMO3P55854 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.35□□□□□ -0.11
SUMO3P55854 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.35□□□□□ -0.11
SUMO3P55854 AC004890.2-204ENST00000481968 304 ntBASIC14.35□□□□□ -0.11
SUMO3P55854 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.35□□□□□ -0.11
SUMO3P55854 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.35□□□□□ -0.11
SUMO3P55854 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SUMO3P55854 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.35□□□□□ -0.11
SUMO3P55854 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.35□□□□□ -0.11
SUMO3P55854 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.35□□□□□ -0.11
SUMO3P55854 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SUMO3P55854 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.35□□□□□ -0.11
SUMO3P55854 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.35□□□□□ -0.11
SUMO3P55854 AL390955.2-201ENST00000603032 514 ntBASIC14.35□□□□□ -0.11
SUMO3P55854 AL109936.8-201ENST00000641772 604 ntBASIC14.35□□□□□ -0.11
SUMO3P55854 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
SUMO3P55854 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.35□□□□□ -0.11
SUMO3P55854 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.35□□□□□ -0.11
SUMO3P55854 AC020658.6-201ENST00000623564 1870 ntBASIC14.35□□□□□ -0.11
SUMO3P55854 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.35□□□□□ -0.11
SUMO3P55854 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SUMO3P55854 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.35□□□□□ -0.11
SUMO3P55854 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SUMO3P55854 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.34□□□□□ -0.11
SUMO3P55854 AC022144.1-201ENST00000602255 1580 ntBASIC14.34□□□□□ -0.11
SUMO3P55854 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SUMO3P55854 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.34□□□□□ -0.11
SUMO3P55854 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SUMO3P55854 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
SUMO3P55854 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms