Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
HOXA1P49639 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXA1P49639 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
HOXA1P49639 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
HOXA1P49639 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXA1P49639 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
HOXA1P49639 CICP23-201ENST00000605013 2741 ntBASIC13.3□□□□□ -0.28
HOXA1P49639 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
HOXA1P49639 REXO1L8P-201ENST00000604378 1897 ntBASIC13.3□□□□□ -0.28
HOXA1P49639 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC13.3□□□□□ -0.28
HOXA1P49639 ATP5G2P1-201ENST00000433580 426 ntBASIC13.3□□□□□ -0.28
HOXA1P49639 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC13.3□□□□□ -0.28
HOXA1P49639 STARD13-205ENST00000439831 945 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 FOSL1P1-201ENST00000511041 816 ntBASIC13.3□□□□□ -0.28
HOXA1P49639 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXA1P49639 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 MIR4492-201ENST00000581627 80 ntBASIC13.3□□□□□ -0.28
HOXA1P49639 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC13.3□□□□□ -0.28
HOXA1P49639 SDCCAG3P1-201ENST00000589292 1150 ntBASIC13.3□□□□□ -0.28
HOXA1P49639 MTDHP3-201ENST00000594186 672 ntBASIC13.3□□□□□ -0.28
HOXA1P49639 CYP2A7P1-201ENST00000595391 815 ntBASIC13.3□□□□□ -0.28
HOXA1P49639 IGHV3OR16-7-201ENST00000604106 360 ntBASIC13.3□□□□□ -0.28
HOXA1P49639 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HOXA1P49639 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXA1P49639 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXA1P49639 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 AC093458.2-201ENST00000623150 629 ntBASIC13.3□□□□□ -0.28
HOXA1P49639 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXA1P49639 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HOXA1P49639 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HOXA1P49639 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXA1P49639 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HOXA1P49639 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXA1P49639 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXA1P49639 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HOXA1P49639 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HOXA1P49639 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.29□□□□□ -0.28
HOXA1P49639 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
HOXA1P49639 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
HOXA1P49639 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.29□□□□□ -0.28
HOXA1P49639 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.29□□□□□ -0.28
HOXA1P49639 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC13.29□□□□□ -0.28
HOXA1P49639 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC13.29□□□□□ -0.28
HOXA1P49639 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HOXA1P49639 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms