Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 MIR769-201ENST00000390225 118 ntBASIC20.45■□□□□ 0.86
COL18A1P39060 MPV17-204ENST00000399052 749 ntTSL 4 BASIC20.45■□□□□ 0.86
COL18A1P39060 PARVG-202ENST00000415224 999 ntTSL 2 BASIC20.45■□□□□ 0.86
COL18A1P39060 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC20.45■□□□□ 0.86
COL18A1P39060 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC20.45■□□□□ 0.86
COL18A1P39060 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
COL18A1P39060 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC20.45■□□□□ 0.86
COL18A1P39060 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC20.45■□□□□ 0.86
COL18A1P39060 AL133499.1-201ENST00000596207 608 ntBASIC20.45■□□□□ 0.86
COL18A1P39060 DIO1-215ENST00000610607 796 ntTSL 5 BASIC20.45■□□□□ 0.86
COL18A1P39060 AP000346.4-201ENST00000614827 381 ntBASIC20.45■□□□□ 0.86
COL18A1P39060 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
COL18A1P39060 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC20.45■□□□□ 0.86
COL18A1P39060 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.45■□□□□ 0.86
COL18A1P39060 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
COL18A1P39060 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC20.45■□□□□ 0.86
COL18A1P39060 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL18A1P39060 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
COL18A1P39060 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
COL18A1P39060 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL18A1P39060 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL18A1P39060 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC20.44■□□□□ 0.86
COL18A1P39060 AC134698.3-201ENST00000523880 214 ntBASIC20.44■□□□□ 0.86
COL18A1P39060 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC20.44■□□□□ 0.86
COL18A1P39060 AC079336.7-201ENST00000623428 1078 ntBASIC20.44■□□□□ 0.86
COL18A1P39060 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 ANKRD30BP2-201ENST00000435744 1610 ntBASIC20.44■□□□□ 0.86
COL18A1P39060 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL18A1P39060 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
COL18A1P39060 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
COL18A1P39060 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.44■□□□□ 0.86
COL18A1P39060 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC20.44■□□□□ 0.86
COL18A1P39060 UFM1-202ENST00000379649 846 ntTSL 4 BASIC20.44■□□□□ 0.86
COL18A1P39060 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC20.44■□□□□ 0.86
COL18A1P39060 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL18A1P39060 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC20.44■□□□□ 0.86
COL18A1P39060 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC20.44■□□□□ 0.86
COL18A1P39060 RN7SL11P-201ENST00000471305 293 ntBASIC20.44■□□□□ 0.86
COL18A1P39060 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC20.44■□□□□ 0.86
COL18A1P39060 AC091544.8-201ENST00000619490 361 ntBASIC20.44■□□□□ 0.86
COL18A1P39060 MIR6727-201ENST00000620702 65 ntBASIC20.44■□□□□ 0.86
COL18A1P39060 CDK7-214ENST00000626796 358 ntTSL 5 BASIC20.44■□□□□ 0.86
COL18A1P39060 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC20.44■□□□□ 0.86
COL18A1P39060 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.44■□□□□ 0.86
COL18A1P39060 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC20.43■□□□□ 0.86
COL18A1P39060 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
COL18A1P39060 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC20.43■□□□□ 0.86
COL18A1P39060 CRCP-204ENST00000398684 492 ntTSL 2 BASIC20.43■□□□□ 0.86
COL18A1P39060 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC20.43■□□□□ 0.86
COL18A1P39060 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL18A1P39060 CFL1-214ENST00000534769 758 ntTSL 2 BASIC20.43■□□□□ 0.86
COL18A1P39060 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC20.43■□□□□ 0.86
COL18A1P39060 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL18A1P39060 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL18A1P39060 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
COL18A1P39060 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL18A1P39060 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC20.42■□□□□ 0.86
COL18A1P39060 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC20.42■□□□□ 0.86
COL18A1P39060 MIR3907-201ENST00000579424 151 ntBASIC20.42■□□□□ 0.86
COL18A1P39060 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL18A1P39060 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC20.42■□□□□ 0.86
COL18A1P39060 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
COL18A1P39060 AL603764.1-201ENST00000636452 321 ntBASIC20.42■□□□□ 0.86
COL18A1P39060 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
COL18A1P39060 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL18A1P39060 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
COL18A1P39060 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms