Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SCN4AP35499 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN4AP35499 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN4AP35499 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SCN4AP35499 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SCN4AP35499 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SCN4AP35499 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SCN4AP35499 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN4AP35499 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
SCN4AP35499 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18.32■□□□□ 0.52
SCN4AP35499 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC18.32■□□□□ 0.52
SCN4AP35499 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.32■□□□□ 0.52
SCN4AP35499 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 AC005915.1-201ENST00000624912 2018 ntBASIC18.32■□□□□ 0.52
SCN4AP35499 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 TBC1D3J-201ENST00000620719 1426 ntBASIC18.32■□□□□ 0.52
SCN4AP35499 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SCN4AP35499 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN4AP35499 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN4AP35499 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SCN4AP35499 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.31■□□□□ 0.52
SCN4AP35499 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SCN4AP35499 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN4AP35499 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC18.31■□□□□ 0.52
SCN4AP35499 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.31■□□□□ 0.52
SCN4AP35499 RCC2P8-201ENST00000502779 1035 ntBASIC18.31■□□□□ 0.52
SCN4AP35499 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SCN4AP35499 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN4AP35499 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC18.31■□□□□ 0.52
SCN4AP35499 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN4AP35499 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.31■□□□□ 0.52
SCN4AP35499 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN4AP35499 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 AC078925.2-201ENST00000624013 1973 ntBASIC18.31■□□□□ 0.52
SCN4AP35499 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.31■□□□□ 0.52
SCN4AP35499 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SCN4AP35499 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
SCN4AP35499 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SCN4AP35499 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SCN4AP35499 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SCN4AP35499 TUBB8P8-201ENST00000458717 1058 ntBASIC18.3■□□□□ 0.52
SCN4AP35499 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
SCN4AP35499 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC18.3■□□□□ 0.52
SCN4AP35499 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.3■□□□□ 0.52
SCN4AP35499 AC009955.4-201ENST00000597192 544 ntBASIC18.3■□□□□ 0.52
SCN4AP35499 AL645728.2-202ENST00000641679 227 ntBASIC18.3■□□□□ 0.52
SCN4AP35499 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SCN4AP35499 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SCN4AP35499 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SCN4AP35499 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SCN4AP35499 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.3■□□□□ 0.52
SCN4AP35499 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
SCN4AP35499 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
SCN4AP35499 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SCN4AP35499 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SCN4AP35499 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.3■□□□□ 0.52
SCN4AP35499 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.3■□□□□ 0.52
SCN4AP35499 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.3■□□□□ 0.52
SCN4AP35499 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.3■□□□□ 0.52
SCN4AP35499 PPOX-204ENST00000462866 473 ntTSL 5 BASIC18.3■□□□□ 0.52
SCN4AP35499 HLA-J-204ENST00000495278 958 ntBASIC18.3■□□□□ 0.52
SCN4AP35499 RBM8B-201ENST00000555532 525 ntBASIC18.3■□□□□ 0.52
SCN4AP35499 DNM1P30-201ENST00000563586 452 ntBASIC18.3■□□□□ 0.52
SCN4AP35499 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC18.3■□□□□ 0.52
SCN4AP35499 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC18.3■□□□□ 0.52
SCN4AP35499 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.3■□□□□ 0.52
SCN4AP35499 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SCN4AP35499 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC18.3■□□□□ 0.52
SCN4AP35499 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SCN4AP35499 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SCN4AP35499 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SCN4AP35499 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
SCN4AP35499 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SCN4AP35499 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SCN4AP35499 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SCN4AP35499 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms