Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.76■□□□□ 0.75
RFC4P35249 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
RFC4P35249 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.76■□□□□ 0.75
RFC4P35249 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
RFC4P35249 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
RFC4P35249 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
RFC4P35249 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 AL645608.8-201ENST00000606034 2086 ntBASIC19.76■□□□□ 0.75
RFC4P35249 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC19.76■□□□□ 0.75
RFC4P35249 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC19.76■□□□□ 0.75
RFC4P35249 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.76■□□□□ 0.75
RFC4P35249 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.76■□□□□ 0.75
RFC4P35249 PTPA-218ENST00000435132 618 ntTSL 2 BASIC19.76■□□□□ 0.75
RFC4P35249 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.76■□□□□ 0.75
RFC4P35249 EIF4HP1-201ENST00000453115 687 ntBASIC19.76■□□□□ 0.75
RFC4P35249 UPF3AP2-201ENST00000457924 1132 ntBASIC19.76■□□□□ 0.75
RFC4P35249 GAPDHP40-201ENST00000505218 1006 ntBASIC19.76■□□□□ 0.75
RFC4P35249 AC105129.2-201ENST00000559536 390 ntBASIC19.76■□□□□ 0.75
RFC4P35249 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
RFC4P35249 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
RFC4P35249 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
RFC4P35249 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.75■□□□□ 0.75
RFC4P35249 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC19.75■□□□□ 0.75
RFC4P35249 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.75■□□□□ 0.75
RFC4P35249 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
RFC4P35249 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
RFC4P35249 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.75■□□□□ 0.75
RFC4P35249 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 AC018892.3-201ENST00000623986 2499 ntBASIC19.75■□□□□ 0.75
RFC4P35249 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
RFC4P35249 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
RFC4P35249 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
RFC4P35249 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
RFC4P35249 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC19.75■□□□□ 0.75
RFC4P35249 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC19.75■□□□□ 0.75
RFC4P35249 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.75■□□□□ 0.75
RFC4P35249 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
RFC4P35249 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
RFC4P35249 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.75■□□□□ 0.75
RFC4P35249 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
RFC4P35249 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.75■□□□□ 0.75
RFC4P35249 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC19.75■□□□□ 0.75
RFC4P35249 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
RFC4P35249 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.74■□□□□ 0.75
RFC4P35249 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
RFC4P35249 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFC4P35249 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFC4P35249 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
RFC4P35249 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.74■□□□□ 0.75
RFC4P35249 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
RFC4P35249 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFC4P35249 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFC4P35249 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFC4P35249 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFC4P35249 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFC4P35249 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFC4P35249 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.74■□□□□ 0.75
RFC4P35249 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC19.74■□□□□ 0.75
RFC4P35249 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
RFC4P35249 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.74■□□□□ 0.75
RFC4P35249 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.74■□□□□ 0.75
RFC4P35249 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.74■□□□□ 0.75
RFC4P35249 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC19.74■□□□□ 0.75
RFC4P35249 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.74■□□□□ 0.75
RFC4P35249 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.74■□□□□ 0.75
RFC4P35249 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.74■□□□□ 0.75
RFC4P35249 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.74■□□□□ 0.75
RFC4P35249 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.74■□□□□ 0.75
RFC4P35249 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19.74■□□□□ 0.75
RFC4P35249 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
RFC4P35249 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
RFC4P35249 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms