Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN4P29074 PCGF3-213ENST00000620529 1899 ntBASIC16.04■□□□□ 0.16
PTPN4P29074 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTPN4P29074 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN4P29074 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN4P29074 TSEN15P1-201ENST00000423257 515 ntBASIC16.04■□□□□ 0.16
PTPN4P29074 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.04■□□□□ 0.16
PTPN4P29074 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN4P29074 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.04■□□□□ 0.16
PTPN4P29074 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.04■□□□□ 0.16
PTPN4P29074 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN4P29074 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN4P29074 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN4P29074 AC105339.1-204ENST00000636249 355 ntBASIC16.04■□□□□ 0.16
PTPN4P29074 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.04■□□□□ 0.16
PTPN4P29074 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTPN4P29074 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.04■□□□□ 0.16
PTPN4P29074 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 AC104581.4-201ENST00000623126 3052 ntBASIC16.04■□□□□ 0.16
PTPN4P29074 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PTPN4P29074 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN4P29074 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.04■□□□□ 0.16
PTPN4P29074 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.04■□□□□ 0.16
PTPN4P29074 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
PTPN4P29074 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.03■□□□□ 0.16
PTPN4P29074 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PTPN4P29074 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
PTPN4P29074 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.03■□□□□ 0.16
PTPN4P29074 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.03■□□□□ 0.16
PTPN4P29074 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.03■□□□□ 0.16
PTPN4P29074 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.03■□□□□ 0.16
PTPN4P29074 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.03■□□□□ 0.16
PTPN4P29074 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 AC002056.1-201ENST00000395613 760 ntBASIC16.03■□□□□ 0.16
PTPN4P29074 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.03■□□□□ 0.16
PTPN4P29074 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.03■□□□□ 0.16
PTPN4P29074 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PTPN4P29074 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PTPN4P29074 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.03■□□□□ 0.16
PTPN4P29074 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.03■□□□□ 0.16
PTPN4P29074 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.03■□□□□ 0.16
PTPN4P29074 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.03■□□□□ 0.16
PTPN4P29074 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.03■□□□□ 0.16
PTPN4P29074 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
PTPN4P29074 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.03■□□□□ 0.16
PTPN4P29074 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTPN4P29074 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
PTPN4P29074 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.02■□□□□ 0.16
PTPN4P29074 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN4P29074 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PTPN4P29074 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PTPN4P29074 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN4P29074 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN4P29074 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.02■□□□□ 0.16
PTPN4P29074 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN4P29074 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN4P29074 CICP23-201ENST00000605013 2741 ntBASIC16.02■□□□□ 0.16
PTPN4P29074 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN4P29074 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms