Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 CLUHP2-201ENST00000426660 1303 ntBASIC19.53■□□□□ 0.72
COL5A3P25940 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.53■□□□□ 0.72
COL5A3P25940 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.53■□□□□ 0.72
COL5A3P25940 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC19.53■□□□□ 0.72
COL5A3P25940 TKT-202ENST00000423516 2075 ntTSL 2 BASIC19.53■□□□□ 0.72
COL5A3P25940 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC19.53■□□□□ 0.72
COL5A3P25940 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 RN7SKP175-201ENST00000408472 289 ntBASIC19.53■□□□□ 0.72
COL5A3P25940 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC19.53■□□□□ 0.72
COL5A3P25940 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC19.53■□□□□ 0.72
COL5A3P25940 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC19.53■□□□□ 0.72
COL5A3P25940 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC19.53■□□□□ 0.72
COL5A3P25940 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
COL5A3P25940 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC19.53■□□□□ 0.72
COL5A3P25940 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 CDK7-214ENST00000626796 358 ntTSL 5 BASIC19.53■□□□□ 0.72
COL5A3P25940 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC19.53■□□□□ 0.72
COL5A3P25940 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC19.53■□□□□ 0.72
COL5A3P25940 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.53■□□□□ 0.72
COL5A3P25940 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 AC018695.7-201ENST00000624587 2492 ntBASIC19.53■□□□□ 0.72
COL5A3P25940 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.53■□□□□ 0.72
COL5A3P25940 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A3P25940 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.52■□□□□ 0.72
COL5A3P25940 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
COL5A3P25940 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A3P25940 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A3P25940 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC19.52■□□□□ 0.72
COL5A3P25940 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A3P25940 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A3P25940 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
COL5A3P25940 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC19.52■□□□□ 0.72
COL5A3P25940 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC19.52■□□□□ 0.72
COL5A3P25940 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A3P25940 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC19.52■□□□□ 0.72
COL5A3P25940 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC19.52■□□□□ 0.72
COL5A3P25940 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC19.52■□□□□ 0.72
COL5A3P25940 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A3P25940 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
COL5A3P25940 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A3P25940 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
COL5A3P25940 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL5A3P25940 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC19.52■□□□□ 0.71
COL5A3P25940 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
COL5A3P25940 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19.52■□□□□ 0.71
COL5A3P25940 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL5A3P25940 ANKRD30BP2-201ENST00000435744 1610 ntBASIC19.51■□□□□ 0.71
COL5A3P25940 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
COL5A3P25940 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL5A3P25940 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.51■□□□□ 0.71
COL5A3P25940 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC19.51■□□□□ 0.71
COL5A3P25940 PARVG-202ENST00000415224 999 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A3P25940 EEF1DP6-201ENST00000449232 372 ntBASIC19.51■□□□□ 0.71
COL5A3P25940 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC19.51■□□□□ 0.71
COL5A3P25940 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A3P25940 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.51■□□□□ 0.71
COL5A3P25940 MIR6727-201ENST00000620702 65 ntBASIC19.51■□□□□ 0.71
COL5A3P25940 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC19.51■□□□□ 0.71
COL5A3P25940 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COL5A3P25940 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC19.51■□□□□ 0.71
COL5A3P25940 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COL5A3P25940 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A3P25940 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COL5A3P25940 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A3P25940 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 CRCP-204ENST00000398684 492 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A3P25940 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC19.51■□□□□ 0.71
COL5A3P25940 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL5A3P25940 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A3P25940 MARK2P5-201ENST00000507649 634 ntBASIC19.51■□□□□ 0.71
COL5A3P25940 AC134698.3-201ENST00000523880 214 ntBASIC19.51■□□□□ 0.71
COL5A3P25940 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC19.51■□□□□ 0.71
COL5A3P25940 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC19.51■□□□□ 0.71
COL5A3P25940 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL5A3P25940 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC19.5■□□□□ 0.71
COL5A3P25940 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL5A3P25940 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.5■□□□□ 0.71
COL5A3P25940 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms