Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
COL9A1P20849 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
COL9A1P20849 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 MSTO2P-201ENST00000314835 1709 ntBASIC16.22■□□□□ 0.19
COL9A1P20849 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.22■□□□□ 0.19
COL9A1P20849 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
COL9A1P20849 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
COL9A1P20849 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.22■□□□□ 0.19
COL9A1P20849 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.22■□□□□ 0.19
COL9A1P20849 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.21■□□□□ 0.19
COL9A1P20849 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 FO393414.2-201ENST00000405153 598 ntBASIC16.21■□□□□ 0.19
COL9A1P20849 BRI3P1-201ENST00000440440 378 ntBASIC16.21■□□□□ 0.19
COL9A1P20849 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.21■□□□□ 0.19
COL9A1P20849 AC012158.2-201ENST00000536546 354 ntBASIC16.21■□□□□ 0.19
COL9A1P20849 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC16.21■□□□□ 0.19
COL9A1P20849 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC16.21■□□□□ 0.19
COL9A1P20849 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC16.21■□□□□ 0.19
COL9A1P20849 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.21■□□□□ 0.19
COL9A1P20849 AC025181.2-201ENST00000606994 802 ntBASIC16.21■□□□□ 0.19
COL9A1P20849 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.21■□□□□ 0.19
COL9A1P20849 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.21■□□□□ 0.19
COL9A1P20849 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
COL9A1P20849 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
COL9A1P20849 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL9A1P20849 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL9A1P20849 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.21■□□□□ 0.18
COL9A1P20849 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL9A1P20849 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.21■□□□□ 0.18
COL9A1P20849 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 AC020931.1-201ENST00000589622 1346 ntBASIC16.2■□□□□ 0.18
COL9A1P20849 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.2■□□□□ 0.18
COL9A1P20849 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
COL9A1P20849 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
COL9A1P20849 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
COL9A1P20849 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
COL9A1P20849 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.2■□□□□ 0.18
COL9A1P20849 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.2■□□□□ 0.18
COL9A1P20849 AL008707.1-201ENST00000422498 534 ntBASIC16.2■□□□□ 0.18
COL9A1P20849 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
COL9A1P20849 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.2■□□□□ 0.18
COL9A1P20849 RN7SL774P-201ENST00000577467 290 ntBASIC16.2■□□□□ 0.18
COL9A1P20849 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.2■□□□□ 0.18
COL9A1P20849 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.2■□□□□ 0.18
COL9A1P20849 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 AC009053.2-201ENST00000563701 2365 ntBASIC16.2■□□□□ 0.18
COL9A1P20849 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL9A1P20849 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.19■□□□□ 0.18
COL9A1P20849 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
COL9A1P20849 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL9A1P20849 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 AC005332.8-201ENST00000622750 2735 ntBASIC16.19■□□□□ 0.18
COL9A1P20849 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
COL9A1P20849 AC012313.1-201ENST00000593393 3059 ntBASIC16.19■□□□□ 0.18
COL9A1P20849 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 LETM1P2-201ENST00000597330 2178 ntBASIC16.19■□□□□ 0.18
COL9A1P20849 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.19■□□□□ 0.18
COL9A1P20849 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.19■□□□□ 0.18
COL9A1P20849 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 MYL10-201ENST00000223167 1009 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC16.19■□□□□ 0.18
COL9A1P20849 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC16.19■□□□□ 0.18
COL9A1P20849 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC16.19■□□□□ 0.18
COL9A1P20849 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.19■□□□□ 0.18
COL9A1P20849 FAM86KP-201ENST00000509817 987 ntBASIC16.19■□□□□ 0.18
COL9A1P20849 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.19■□□□□ 0.18
COL9A1P20849 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL9A1P20849 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.19■□□□□ 0.18
COL9A1P20849 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL9A1P20849 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms