Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 HLA-V-204ENST00000476601 1289 ntBASIC15.87■□□□□ 0.13
MSH3P20585 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.87■□□□□ 0.13
MSH3P20585 AC027369.6-201ENST00000525520 931 ntBASIC15.87■□□□□ 0.13
MSH3P20585 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.87■□□□□ 0.13
MSH3P20585 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.87■□□□□ 0.13
MSH3P20585 DUX4L27-201ENST00000554796 1261 ntBASIC15.87■□□□□ 0.13
MSH3P20585 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.87■□□□□ 0.13
MSH3P20585 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 SPDYE12P-201ENST00000618416 771 ntBASIC15.87■□□□□ 0.13
MSH3P20585 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.87■□□□□ 0.13
MSH3P20585 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 AC103702.1-201ENST00000548801 2630 ntBASIC15.87■□□□□ 0.13
MSH3P20585 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.87■□□□□ 0.13
MSH3P20585 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
MSH3P20585 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 NORAD-201ENST00000565493 5339 ntBASIC15.87■□□□□ 0.13
MSH3P20585 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
MSH3P20585 AC112504.1-201ENST00000623415 1841 ntBASIC15.87■□□□□ 0.13
MSH3P20585 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
MSH3P20585 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.86■□□□□ 0.13
MSH3P20585 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.86■□□□□ 0.13
MSH3P20585 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
MSH3P20585 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
MSH3P20585 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.86■□□□□ 0.13
MSH3P20585 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
MSH3P20585 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.86■□□□□ 0.13
MSH3P20585 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.86■□□□□ 0.13
MSH3P20585 AC027796.2-201ENST00000575326 344 ntBASIC15.86■□□□□ 0.13
MSH3P20585 AL158211.3-201ENST00000607385 239 ntBASIC15.86■□□□□ 0.13
MSH3P20585 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.86■□□□□ 0.13
MSH3P20585 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.86■□□□□ 0.13
MSH3P20585 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.86■□□□□ 0.13
MSH3P20585 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.86■□□□□ 0.13
MSH3P20585 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.86■□□□□ 0.13
MSH3P20585 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.86■□□□□ 0.13
MSH3P20585 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MSH3P20585 AP005117.1-202ENST00000581724 1908 ntBASIC15.86■□□□□ 0.13
MSH3P20585 FO538757.1-201ENST00000623083 1397 ntBASIC15.86■□□□□ 0.13
MSH3P20585 AC010491.1-201ENST00000563101 2797 ntBASIC15.86■□□□□ 0.13
MSH3P20585 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.86■□□□□ 0.13
MSH3P20585 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.86■□□□□ 0.13
MSH3P20585 KRT8P37-201ENST00000451609 1420 ntBASIC15.85■□□□□ 0.13
MSH3P20585 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
MSH3P20585 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.85■□□□□ 0.13
MSH3P20585 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
MSH3P20585 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.85■□□□□ 0.13
MSH3P20585 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
MSH3P20585 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
MSH3P20585 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.85■□□□□ 0.13
MSH3P20585 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
MSH3P20585 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 SPDYE17-201ENST00000412399 783 ntBASIC15.85■□□□□ 0.13
MSH3P20585 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
MSH3P20585 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.85■□□□□ 0.13
MSH3P20585 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.85■□□□□ 0.13
MSH3P20585 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.85■□□□□ 0.13
MSH3P20585 AL138828.2-201ENST00000615812 383 ntBASIC15.85■□□□□ 0.13
MSH3P20585 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.85■□□□□ 0.13
MSH3P20585 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.85■□□□□ 0.13
MSH3P20585 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.85■□□□□ 0.13
MSH3P20585 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 HYMAI-201ENST00000635591 3347 ntBASIC15.85■□□□□ 0.13
MSH3P20585 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
MSH3P20585 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
MSH3P20585 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
MSH3P20585 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
MSH3P20585 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms