Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIG1P18858 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.36■□□□□ 0.53
LIG1P18858 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.36■□□□□ 0.53
LIG1P18858 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.36■□□□□ 0.53
LIG1P18858 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.36■□□□□ 0.53
LIG1P18858 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.36■□□□□ 0.53
LIG1P18858 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.36■□□□□ 0.53
LIG1P18858 AP001160.2-201ENST00000596071 487 ntBASIC18.36■□□□□ 0.53
LIG1P18858 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG1P18858 AC112693.3-201ENST00000624819 1983 ntBASIC18.36■□□□□ 0.53
LIG1P18858 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC18.36■□□□□ 0.53
LIG1P18858 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.36■□□□□ 0.53
LIG1P18858 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LIG1P18858 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.35■□□□□ 0.53
LIG1P18858 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.35■□□□□ 0.53
LIG1P18858 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
LIG1P18858 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.35■□□□□ 0.53
LIG1P18858 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 ACTG1P14-201ENST00000446382 1122 ntBASIC18.35■□□□□ 0.53
LIG1P18858 AC245100.5-201ENST00000452108 331 ntBASIC18.35■□□□□ 0.53
LIG1P18858 AC109635.5-201ENST00000533593 962 ntBASIC18.35■□□□□ 0.53
LIG1P18858 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
LIG1P18858 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.35■□□□□ 0.53
LIG1P18858 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.35■□□□□ 0.53
LIG1P18858 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.35■□□□□ 0.53
LIG1P18858 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.35■□□□□ 0.53
LIG1P18858 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.35■□□□□ 0.53
LIG1P18858 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG1P18858 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG1P18858 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.34■□□□□ 0.53
LIG1P18858 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LIG1P18858 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
LIG1P18858 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LIG1P18858 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LIG1P18858 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC18.34■□□□□ 0.53
LIG1P18858 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.34■□□□□ 0.53
LIG1P18858 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.34■□□□□ 0.53
LIG1P18858 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 AC092474.2-201ENST00000424288 719 ntBASIC18.34■□□□□ 0.53
LIG1P18858 CNN2P11-201ENST00000429351 262 ntBASIC18.34■□□□□ 0.53
LIG1P18858 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 SPDYE11-202ENST00000450699 704 ntBASIC18.34■□□□□ 0.53
LIG1P18858 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.34■□□□□ 0.53
LIG1P18858 KRT8P48-201ENST00000515599 1220 ntBASIC18.34■□□□□ 0.53
LIG1P18858 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.34■□□□□ 0.53
LIG1P18858 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LIG1P18858 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.34■□□□□ 0.53
LIG1P18858 SPDYE9P-201ENST00000570642 692 ntBASIC18.34■□□□□ 0.53
LIG1P18858 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.34■□□□□ 0.53
LIG1P18858 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIG1P18858 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIG1P18858 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.34■□□□□ 0.53
LIG1P18858 SPDYE10P-202ENST00000612005 668 ntBASIC18.34■□□□□ 0.53
LIG1P18858 SPDYE8P-202ENST00000612377 668 ntBASIC18.34■□□□□ 0.53
LIG1P18858 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LIG1P18858 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.34■□□□□ 0.53
LIG1P18858 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.34■□□□□ 0.53
LIG1P18858 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC18.34■□□□□ 0.53
LIG1P18858 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
LIG1P18858 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG1P18858 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC18.34■□□□□ 0.53
LIG1P18858 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms